YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17943196, gi\|...
Organism:	Homo sapiens
Length:	165 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17943196, gi|....

Description	E-value	Query Range	Subject Range
gi\|50748592 - gi\|50748592\|ref\|XP_421316.1\| PREDICTED: similar to calmodulin 1; Calmodulin 1 (phosphorylase kinase,...	162.0	[0..2]	[131..523]
gi\|94471603 - gi\|94471603\|gb\|ABF21069.1\| mitochondrial calcium sensor cameleon 4mtD3cpv [synthetic construct]	148.0	[0..2]	[139..374]
gi\|114677917 - gi\|114677917\|ref\|XP_512771.2\| PREDICTED: similar to calmodulin [Pan troglodytes]	147.0	[0..2]	[131..134]
gi\|76628526 - gi\|76628526\|ref\|XP_874377.1\| PREDICTED: similar to calmodulin 1 [Bos taurus]	147.0	[0..2]	[131..88]
gi\|115712025, gi... - gi\|115946043\|ref\|XP_001192367.1\| PREDICTED: similar to apoptosis-linked gene 2 [Strongylocentrotus p...	147.0	[0..1]	[163..131]
gi\|27765074, gi\|... - gi\|7684607\|gb\|AAD28254.3\|AF127765_1 calpain 3; calcium activated neutral protease; CAPN3; CL1 [Homo ...	146.0	[0..2]	[164..562]
gi\|7674485 - gi\|7674485\|gb\|AAD28255.2\|AF127766_1 calpain 3; calcium activated neutral protease [Mus musculus]	145.0	[0..2]	[164..562]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVYTYFSAVA GQDGEVDAEE LQRCLTQSGI NGTYSPFSLE TCRIMIAMLD RDHTGKMGFN  60
   61 AFKELWAALN AWKENFMTVD QDGSGTVEHH ELRQAIGLMG YRLSPQTLTT IVKRYSKNGR 120
  121 IFFDDYVACC VKLRALTDFF RKRDHLQQGS ANFIYDDFLQ GTMAI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	1k94A
Description:	Grancalcin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.482343911625985	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: