YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17943123, gi\|...
Organism:	Homo sapiens
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17943123, gi|....

Description	E-value	Query Range	Subject Range
gi\|114599331 - gi\|114599331\|ref\|XP_526869.2\| PREDICTED: X-ray repair cross complementing protein 4 isoform 3 [Pan t...	277.0	[0..1]	[213..1]
gi\|190690541 - gi\|190690541\|gb\|ACE87045.1\| X-ray repair complementing defective repair in Chinese hamster cells 4 p... XRCC4 - X-ray repair complementing defective repair in Chinese hamster cells 4	272.0	[0..1]	[213..1]
gi\|30584793, gi\|... - gi\|60653447\|gb\|AAX29418.1\| X-ray repair complementing defective repair in Chinese hamster cells 4 [s...	270.0	[0..1]	[213..1]
gi\|109077848 - gi\|109077848\|ref\|XP_001111720.1\| PREDICTED: similar to X-ray repair cross complementing protein 4 is...	270.0	[0..1]	[213..1]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERKISRIHL VSEPSITHFL QVSWEKTLES GFVITLTDGH SAWTGTVSES EISQEADDMA  60
   61 MEKGKYVGEL RKALLSGAGP ADVYTFNFSK ESAYFFFEKN LKDVSFRLGS FNLEKVENPA 120
  121 EVIRELIAYA LDTIAENQAK NEHLQKENER LLRDWNDVQG RFEKAVSAKE ALETDLYKRF 180
  181 ILVLNEKKTK IRSLHNKLLN AAQEREKDIK QEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.522879
Match:	1fu1A
Description:	XRCC4, N-terminal domain; XRCC4, C-terminal oligomerization domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits