YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17942861
Organism:	Escherichia coli
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17942861.

Description	E-value	Query Range	Subject Range
gi\|106891330, gi... - gi\|148657071\|ref\|YP_001277276.1\| rhodanese domain-containing protein [Roseiflexus sp. RS-1], gi\|1485...	122.0	[0..6]	[104..46]
gi\|68186322, gi\|... - gi\|91773522\|ref\|YP_566214.1\| rhodanese-like protein [Methanococcoides burtonii DSM 6242], gi\|9171253...	120.0	[0..3]	[105..40]
gi\|67932282, gi\|... - gi\|67932282\|ref\|ZP_00525429.1\| UBA/THIF-type NAD/FAD binding fold:Rhodanese-like:MoeZ/MoeB [Solibact...	120.0	[0..6]	[106..286]
gi\|94555662, gi\|... - gi\|94985381\|ref\|YP_604745.1\| rhodanese-like protein [Deinococcus geothermalis DSM 11300], gi\|9455566...	119.0	[0..2]	[108..65]
gi\|73669158, gi\|... - gi\|73669158\|ref\|YP_305173.1\| hypothetical protein Mbar_A1649 [Methanosarcina barkeri str. Fusaro], g...	118.0	[0..2]	[105..49]
gi\|55772221, gi\|... - gi\|55980808\|ref\|YP_144105.1\| phage shock protein E [Thermus thermophilus HB8], gi\|55772221\|dbj\|BAD70...	118.0	[0..3]	[104..36]
gi\|21228006, gi\|... - gi\|21228006\|ref\|NP_633928.1\| hypothetical protein MM_1904 [Methanosarcina mazei Go1], gi\|20906435\|gb...	118.0	[0..2]	[105..31]
gi\|45545541, gi\|... - gi\|68563155\|ref\|ZP_00602357.1\| UBA/THIF-type NAD/FAD binding fold:Rhodanese-like:MoeZ/MoeB [Rubrobac...	118.0	[0..2]	[106..287]
gi\|20089631, gi\|... - gi\|20089631\|ref\|NP_615706.1\| hypothetical protein MA0746 [Methanosarcina acetivorans C2A], gi\|199145...	118.0	[0..3]	[105..38]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQFECINVA DAHQKLQEKE AVLVDIRDPQ SFAMGHAVQA FHLTNDTLGA FMRDNDFDTP  60
   61 VMVMXYHGNS SKGAAQYLLQ QGYDVVYSID GGFEAWQRQF PAEVAYGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	1gmxA
Description:	Sulfurtransferase GlpE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
sulfurtransferase activity	2.00214292806095	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	1.49017617674976	bayes_pls_golite062009
catalytic activity	1.05774816707958	bayes_pls_golite062009
thiosulfate sulfurtransferase activity	0.470141659001869	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: