YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11514679, gi\|...
Organism:	Homo sapiens
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11514679, gi|....

Description	E-value	Query Range	Subject Range
gi\|21430981 - gi\|21430981\|gb\|AAM49800.1\| RAP74 subunit of transcription factor IIF [Xenopus laevis]	240.0	[0..1]	[171..2]
gi\|55241996, gi\|... - gi\|58382744\|ref\|XP_312144.2\| ENSANGP00000022073 [Anopheles gambiae str. PEST], gi\|55241996\|gb\|EAA078...	239.0	[0..1]	[171..1]
gi\|73987252 - gi\|73987252\|ref\|XP_533935.2\| PREDICTED: similar to Transcription initiation factor IIF alpha subunit...	226.0	[0..1]	[171..103]
gi\|114674895 - gi\|114674895\|ref\|XP_512314.2\| PREDICTED: general transcription factor IIF, polypeptide 1, 74kDa [Pan...	224.0	[0..1]	[171..2]
gi\|61372356, gi\|... - gi\|61372356\|gb\|AAX43829.1\| general transcription factor IIF polypeptide 1 [synthetic construct], gi\|...	224.0	[0..1]	[171..2]
gi\|48145713 - gi\|48145713\|emb\|CAG33079.1\| GTF2F1 [Homo sapiens]	224.0	[0..1]	[171..2]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AALGPSSQNV TEYVVRVPKN TTKKYNIMAF NAADKVNFAT WNQARLERDL SNKKIYQEEE  60
   61 MPESGAGSEF NRKLREEARR KKYGIVLKEF RPEDQPWLLR VNGKSGRKFK GIKKGGVTEN 120
  121 TSYYIFTQCP DGAFEAFPVH NWYNFTPLAR HRTLTAEEAE EEWERRNKVL N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.0
Match:	1f3uB
Description:	TFIIF alpha subunit, Rap74
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits