YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11514678, gi\|...
Organism:	Homo sapiens
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11514678, gi|....

Description	E-value	Query Range	Subject Range
gi\|73989304 - gi\|73989304\|ref\|XP_851466.1\| PREDICTED: similar to general transcription factor IIF, polypeptide 2 [...	185.0	[0..1]	[118..109]
T2FB_RAT - General transcription factor IIF subunit 2 OS=Rattus norvegicus GN=Gtf2f2 PE=1 SV=1	183.0	[0..1]	[118..2]
CCDS9395.1_1 - null gi\|109120627 - gi\|109120627\|ref\|XP_001094507.1\| PREDICTED: general transcription factor IIF, polypeptide 2, 30kDa [...	183.0	[0..1]	[118..2]
T2FB_BOVIN - General transcription factor IIF subunit 2 OS=Bos taurus GN=GTF2F2 PE=2 SV=1	183.0	[0..1]	[118..2]
T2FB_MOUSE - General transcription factor IIF subunit 2 OS=Mus musculus GN=Gtf2f2 PE=1 SV=1	181.0	[0..1]	[118..2]
gi\|226503, gi\|86901 - pir\|\|S06141 ATP-dependent DNA helicase RAP30/74 chain RAP30 - human, gi\|226503\|prf\|\|1515353A transc...	181.0	[0..1]	[118..2]
gi\|62901918 - gi\|62901918\|gb\|AAY18910.1\| RAP30 [synthetic construct]	180.0	[0..1]	[118..26]
gi\|50730835 - gi\|50730835\|ref\|XP_417039.1\| PREDICTED: similar to General transcription factor IIF, polypeptide 2 [...	173.0	[0..1]	[118..80]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AERGELDLTG AKQNTGVWLV KVPKYLSQQW AKASGRGEVG KLRIAKTQGR TEVSFTLNED  60
   61 LANIHDIGGK PASVSAPREH PFVLQSVGGQ TLTVFTESSS DKLSLEGIVV QRAECRPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.154902
Match:	1f3uA
Description:	TFIIF beta subunit, Rap30
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits