YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16975299
Organism:	Homo sapiens
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16975299.

Description	E-value	Query Range	Subject Range
gi\|47226732 - gi\|47226732\|emb\|CAG07891.1\| unnamed protein product [Tetraodon nigroviridis]	116.0	[0..2]	[152..2360]
gi\|68395478 - gi\|68395478\|ref\|XP_686853.1\| PREDICTED: similar to P-selectin precursor (Granule membrane protein 14...	115.0	[0..10]	[157..1]
gi\|56417699 - gi\|56417699\|emb\|CAI19357.1\| selectin E [Homo sapiens]	115.0	[0..1]	[157..22]
LYAM2_BOVIN - E-selectin OS=Bos taurus GN=SELE PE=2 SV=1	115.0	[0..1]	[157..23]
gi\|13898376 - gi\|13898376\|gb\|AAK48710.1\|AF307970_1 E-selectin [Odocoileus hemionus]	115.0	[0..1]	[157..23]
LYAM2_HORSE - E-selectin OS=Equus caballus GN=SELE PE=2 SV=1	114.0	[0..1]	[157..22]
gi\|2136974, gi\|1... - pir\|\|I46709 endothelial leukocyte adhesion molecule 1 - rabbit, gi\|165007\|gb\|AAA31244.1\| endothelia...	114.0	[0..1]	[157..24]
gi\|27372091 - gi\|27372091\|gb\|AAN87893.1\| LECAM-1 [Sigmodon hispidus]	113.0	[0..1]	[157..39]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WSYNTSTEAM TYDEASAYCQ QRYTHLVAIQ NKEEIEYLNS ILSYSPSYYW IGIRKVNNVW  60
   61 VWVGTQKPLT EEAKNWAPGE PNNRQKDEDC VEIYIKREKD VGMWNDERCS KKKLALCYTA 120
  121 ACTNTSCSGH GECVETINNY TCKCDPGFSG LKCEQIV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	1g1tA
Description:	E-selectin; E-selectin, EGF-domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.286076792172079	bayes_pls_golite062009
protein binding	0.14494900666454	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: