YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16974920
Organism:	Homo sapiens
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16974920.

Description	E-value	Query Range	Subject Range
gi\|17149041 - gi\|17149041\|gb\|AAL35895.1\|AF443792_1 NADPH oxidase component p40phox variant [Bison bison]	133.0	[0..1]	[143..2]
gi\|187937026, gi... - gi\|187937026\|ref\|NP_001120776.1\| neutrophil cytosolic factor 4 [Rattus norvegicus], gi\|187469326\|gb\|...	132.0	[0..1]	[143..2]
NCF4_MOUSE - Neutrophil cytosol factor 4 OS=Mus musculus GN=Ncf4 PE=2 SV=1	132.0	[0..1]	[143..2]
gi\|73969805 - gi\|73969805\|ref\|XP_538398.2\| PREDICTED: similar to neutrophil cytosolic factor 4 (40kD) isoform 1 [C...	130.0	[0..1]	[143..2]
gi\|94733255, gi\|... - gi\|94733997\|emb\|CAK10863.1\| neutrophil cytosolic factor 4 [Danio rerio], gi\|94733255\|emb\|CAK11473.1\|...	130.0	[0..1]	[143..2]
gi\|114051670, gi... - gi\|87578215\|gb\|AAI13231.1\| Neutrophil cytosolic factor 4, 40kDa [Bos taurus], gi\|114051670\|ref\|NP_00...	128.0	[0..1]	[143..2]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVAQQLRAES DFEQLPDDVA ISANIADIEE KRGFTSHFVF VIEVKTKGGS KYLIYRRYRQ  60
   61 FHALQSKLEE RFGPDSKSSA LACTLPTLPA KVYVGVKQEI AEMRIPALNA YMKSLLSLPV 120
  121 WVLMDEDVRI FFYQSPYDSE QVP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.30103
Match:	2dybA
Description:	No description for 2dybA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits