YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16974818, gi\|...
Organism:	Haemophilus influenzae
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16974818, gi|....

Description	E-value	Query Range	Subject Range
CMOA_ACTSZ - Carboxy-S-adenosyl-L-methionine synthase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) G...	200.0	[0..6]	[244..3]
gi\|116183205, gi... - gi\|75853618\|ref\|ZP_00761419.1\| COG0500: SAM-dependent methyltransferases [Vibrio sp. Ex25], gi\|11618...	200.0	[0..7]	[244..8]
CMOA_VIBPA - Carboxy-S-adenosyl-L-methionine synthase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210... CMOA_VIBPA - tRNA (cmo5U34)-methyltransferase OS=Vibrio parahaemolyticus GN=cmoA PE=3 SV=1 gi\|149748079, gi... - gi\|153838512\|ref\|ZP_01991179.1\| methyltransferase, putative [Vibrio parahaemolyticus AQ3810], gi\|149...	199.0	[0..7]	[244..8]
CMOA_SHELP - Carboxy-S-adenosyl-L-methionine synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=cmoA...	199.0	[0..7]	[244..6]
gi\|116188959, gi... - gi\|75830108\|ref\|ZP_00759392.1\| COG0500: SAM-dependent methyltransferases [Vibrio cholerae MO10], gi\|... gi\|75814497 - gi\|75814497\|ref\|ZP_00745078.1\| COG0500: SAM-dependent methyltransferases [Vibrio cholerae V52] gi\|75826516 - gi\|75826516\|ref\|ZP_00755951.1\| COG0500: SAM-dependent methyltransferases [Vibrio cholerae O395] tr\|A0A085QI64\|A0... - tRNA (cmo5U34)-methyltransferase OS=Vibrio cholerae GN=cmoA PE=3 SV=1	198.0	[0..6]	[244..4]
gi\|77973520 - gi\|77973520\|ref\|ZP_00829067.1\| COG0500: SAM-dependent methyltransferases [Yersinia frederiksenii ATC...	198.0	[0..5]	[244..26]
CMOA_VIBCM - Carboxy-S-adenosyl-L-methionine synthase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=cmoA PE=3 ... gi\|121591624, gi... - gi\|121591624\|ref\|ZP_01678870.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215465... gi\|153222308, gi... - gi\|153222308\|ref\|ZP_01953068.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241190... gi\|229342505, gi... - gi\|229520407\|ref\|ZP_04409832.1\| tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase [Vibrio cho... gi\|121628235, gi... - gi\|121730016\|ref\|ZP_01682429.1\| conserved hypothetical protein [Vibrio cholerae V52], gi\|121628235\|g... gi\|229344923, gi... - gi\|229518208\|ref\|ZP_04407652.1\| tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase [Vibrio cho... gi\|254848291, gi... - gi\|254848291\|ref\|ZP_05237641.1\| conserved hypothetical protein [Vibrio cholerae MO10], gi\|254843996\|... gi\|229347315, gi... - gi\|229515546\|ref\|ZP_04405005.1\| tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase [Vibrio cho... gi\|153803288, gi... - gi\|153803288\|ref\|ZP_01957874.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124121168... gi\|229505242, gi... - gi\|229505242\|ref\|ZP_04394752.1\| tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase [Vibrio cho... gi\|229351053, gi... - gi\|229511088\|ref\|ZP_04400567.1\| tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase [Vibrio cho... gi\|153819877, gi... - gi\|153819877\|ref\|ZP_01972544.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12650... gi\|229608261, gi... - gi\|229608261\|ref\|YP_002878909.1\| tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase [Vibrio ch... gi\|254291588, gi... - gi\|254291588\|ref\|ZP_04962378.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197751... CMOA_VIBCH - Carboxy-S-adenosyl-L-methionine synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor ... gi\|153828694, gi... - gi\|153828694\|ref\|ZP_01981361.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887584... CMOA_VIBCH - tRNA (cmo5U34)-methyltransferase OS=Vibrio cholerae GN=cmoA PE=3 SV=1 gi\|149740261, gi... - gi\|153826041\|ref\|ZP_01978708.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149740261... CMOA_VIBC3 - Carboxy-S-adenosyl-L-methionine synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classic...	197.0	[0..6]	[244..8]
CMOA_SHESW - Carboxy-S-adenosyl-L-methionine synthase OS=Shewanella sp. (strain W3-18-1) GN=cmoA PE=3 SV=1	197.0	[0..7]	[244..6]
SO2435 - methyltransferase putative CMOA_SHEON - Carboxy-S-adenosyl-L-methionine synthase OS=Shewanella oneidensis (strain MR-1) GN=cmoA PE=3 SV=1	197.0	[0..7]	[244..6]
gi\|238799215, gi... - gi\|77960146\|ref\|ZP_00824035.1\| COG0500: SAM-dependent methyltransferases [Yersinia mollaretii ATCC 4...	197.0	[0..5]	[244..28]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHXVKDTLF STPIAKLGDF IFDENVAEVF PDXIQRSVPG YSNIITAIGX LAERFVTADS  60
   61 NVYDLGCSRG AATLSARRNI NQPNVKIIGI DNSQPXVERC RQHIAAYHSE IPVEILCNDI 120
  121 RHVEIKNASX VILNFTLQFL PPEDRIALLT KIYEGLNPNG VLVLSEKFRF EDTKINHLLI 180
  181 DLHHQFKRAN GYSELEVSQK RTALENVXRT DSIETHKVRL KNVGFSQVEL WFQCFNFGSX 240
  241 IAVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.39794
Match:	1im8A
Description:	Hypothetical protein HI0319 (YecO)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.25333584501255	bayes_pls_golite062009
transferase activity	0.999964866871553	bayes_pls_golite062009
methyltransferase activity	0.558878917426836	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.557560946446304	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.0605581837493382	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: