YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6980394
Organism:	Homo sapiens
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6980394.

Description	E-value	Query Range	Subject Range
gi\|114590406, gi... - gi\|55621492\|ref\|XP_516879.1\| PREDICTED: tumor necrosis factor (ligand) superfamily, member 10 isofor...	227.0	[0..1]	[191..91]
TNFSF10 - tumor necrosis factor (ligand) superfamily, member 10 gi\|123979940, gi... - gi\|123994707\|gb\|ABM84955.1\| tumor necrosis factor (ligand) superfamily, member 10 [synthetic constru...	224.0	[0..1]	[191..91]
gi\|54695996, gi\|... - gi\|61368225\|gb\|AAX43133.1\| tumor necrosis factor superfamily member 10 [synthetic construct], gi\|546...	224.0	[0..1]	[191..91]
gi\|109044265 - gi\|109044265\|ref\|XP_001084768.1\| PREDICTED: tumor necrosis factor (ligand) superfamily, member 10 [M... gi\|90083054 - gi\|90083054\|dbj\|BAE90609.1\| unnamed protein product [Macaca fascicularis]	222.0	[0..1]	[191..91]
gi\|67010017, gi\|... - gi\|67010017\|ref\|NP_001019867.1\| tumor necrosis factor (ligand) superfamily, member 10 [Sus scrofa], ...	214.0	[0..1]	[191..91]
gi\|76607681 - gi\|76607681\|ref\|XP_583785.2\| PREDICTED: similar to Tumor necrosis factor ligand superfamily member 1...	206.0	[0..1]	[191..105]
TNF10_MOUSE - Tumor necrosis factor ligand superfamily member 10 OS=Mus musculus GN=Tnfsf10 PE=2 SV=1	198.0	[0..1]	[190..95]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILRTSEETI STVQEKQQNI SPLVRERGPQ RVAAHITGTR GRSNTLSSPN SKNEKALGRK  60
   61 INSWESSRSG HSFLSNLHLR NGELVIHEKG FYYIYSQTYF RFQEEIKENT KNDKQMVQYI 120
  121 YKYTSYPAPI LLMKSARNSC WSKDAEYGLY SIYQGGIFEL KENDRIFVSV TNEHLIDMDH 180
  181 EASFFGAFLV G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.522879
Match:	1dg6A
Description:	Apoptosis-2 ligand, apo2l/TRAIL
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits