YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15988191
Organism:	Escherichia coli
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15988191.

Description	E-value	Query Range	Subject Range
gi\|114319563, gi... - gi\|114319563\|ref\|YP_741246.1\| DNA polymerase III, delta subunit [Alkalilimnicola ehrlichii MLHE-1], ...	155.0	[0..2]	[139..1]
gi\|148549873, gi... - gi\|82738217\|ref\|ZP_00901054.1\| DNA polymerase III, delta subunit [Pseudomonas putida F1], gi\|8271471...	153.0	[0..2]	[140..1]
tr\|I7C2C3\|I7C2C3... - DNA polymerase III subunit delta OS=Pseudomonas putida (strain DOT-T1E) GN=holA PE=4 SV=1 gi\|26991476, gi\|... - gi\|26991476\|ref\|NP_746901.1\| DNA polymerase III subunit delta [Pseudomonas putida KT2440], gi\|249865...	152.0	[0..2]	[140..1]
gi\|89092045, gi\|... - gi\|89092045\|ref\|ZP_01165000.1\| DNA polymerase III subunit delta [Oceanospirillum sp. MED92], gi\|8908...	151.0	[0..2]	[138..1]
gi\|70732746, gi\|... - gi\|70732746\|ref\|YP_262509.1\| DNA polymerase III subunit delta [Pseudomonas fluorescens Pf-5], gi\|683...	151.0	[0..2]	[130..1]
gi\|48728988, gi\|... - gi\|77461180\|ref\|YP_350687.1\| DNA polymerase III subunit delta [Pseudomonas fluorescens Pf0-1], gi\|77...	151.0	[0..2]	[130..1]
gi\|95112743 - gi\|95112743\|emb\|CAK17471.1\| DNA polymerase III, delta subunit, probably ATP hydrolase [Pseudomonas e... gi\|104783756, gi... - gi\|95112743\|emb\|CAK17471.1\| DNA polymerase III, delta subunit, probably ATP hydrolase [Pseudomonas e...	151.0	[0..2]	[130..1]
gi\|117919448, gi... - gi\|78688110\|ref\|ZP_00852831.1\| DNA polymerase III, delta subunit [Shewanella sp. ANA-3], gi\|78504141...	150.0	[0..2]	[139..1]
gi\|113884023, gi... - gi\|82498437\|ref\|ZP_00883934.1\| DNA polymerase III, delta subunit [Shewanella sp. MR-4], gi\|82403554\|...	150.0	[0..2]	[139..1]
gi\|36784695, gi\|... - gi\|37525268\|ref\|NP_928612.1\| DNA polymerase III subunit delta [Photorhabdus luminescens subsp. laumo...	150.0	[0..1]	[140..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRLYPEQLR AQLNEGLRAA YLLLGNDPLL LQESQDAVRQ VAAAQGFEEH HTFSIDPNTD  60
   61 WNAIFSLCQA MSLFASRQTL LLLLPENGPN AAINEQLLTL TGLLHDDLLL IVRGNKLSKA 120
  121 QENAAWFTAL ANRSVQVTCQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.045757
Match:	1jqlB
Description:	delta subunit of DNA polymerase III, N-domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.470983068319171	bayes_pls_golite062009
hydrolase activity	0.0582794297634999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: