YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2914630, gi\|2...
Organism:	Homo sapiens
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2914630, gi|2....

Description	E-value	Query Range	Subject Range
APBA1 - amyloid beta (A4) precursor protein-binding, family A, member 1 gi\|162318152, gi... - gi\|162318448\|gb\|AAI56048.1\| Amyloid beta (A4) precursor protein-binding, family A, member 1 [synthet...	202.0	[0..2]	[172..453]
sp\|Q02410\|APBA1_... - Amyloid beta A4 precursor protein-binding family A member 1 OS=Homo sapiens GN=APBA1 PE=1 SV=3 VAR_0... gi\|114624954, gi... - gi\|114624954\|ref\|XP_001138890.1\| PREDICTED: amyloid beta A4 precursor protein-binding, family A, mem...	202.0	[0..2]	[172..453]
gi\|76669037 - gi\|76669037\|ref\|XP_593610.2\| PREDICTED: similar to amyloid beta A4 precursor protein-binding, family...	202.0	[0..2]	[172..438]
gi\|26328087, gi\|... - ref\|NP_796008.1\| amyloid beta (A4) precursor protein-binding, family A, member 1 [Mus musculus], g...	202.0	[0..2]	[172..68]
APBA1_RAT - Amyloid beta A4 precursor protein-binding family A member 1 OS=Rattus norvegicus GN=Apba1 PE=1 SV=1	200.0	[0..2]	[172..455]
gi\|68363560 - gi\|68363560\|ref\|XP_699142.1\| PREDICTED: similar to amyloid beta A4 precursor protein-binding, family...	188.0	[0..2]	[172..426]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 XEDLIDGIIF AANYLGSTQL LSDKTPSKNV RXXQAQEAVS RIKXAQKLAK SRKKAPEGES  60
   61 QPXTEVDLFI LTQRIKVLNA DTQETXXDHP LRTISYIADI GNIVVLXARR RIPRSNSQEN 120
  121 VEASHPSQDG KRQYKXICHV FESEDAQLIA QSIGQAFSVA YQEFLRANGI NP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.0
Match:	1aqcA
Description:	X11
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.597587183571285	bayes_pls_golite062009
protein binding	0.29116370406325	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: