YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15826741, gi\|...
Organism:	Drosophila melanogaster
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15826741, gi|....

Description	E-value	Query Range	Subject Range
gi\|26338173 - gi\|26338173\|dbj\|BAC32772.1\| unnamed protein product [Mus musculus]	112.0	[0..3]	[97..128]
gi\|50731285 - gi\|50731285\|ref\|XP_417217.1\| PREDICTED: similar to chapsyn-110; discs large homolog 2, partial [Gall...	112.0	[0..3]	[97..1956]
gi\|73951007 - gi\|73951007\|ref\|XP_855568.1\| PREDICTED: tight junction protein 1 [Canis familiaris]	110.0	[0..5]	[98..8]
TJP1 - tight junction protein 1 (zona occludens 1)	110.0	[0..5]	[98..8]
gi\|62640685 - gi\|62640685\|ref\|XP_218747.3\| PREDICTED: similar to tight junction protein 1 [Rattus norvegicus]	110.0	[0..5]	[98..20]
gi\|114639587 - gi\|114639587\|ref\|XP_001175212.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]	110.0	[0..3]	[97..198]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGELIHMVT LDKTGKKSFG ICIVRGEVKD SPNTKTTGIF IKGIVPDSPA HLCGRLKVGD  60
   61 RILSLNGKDV RNSTEQAVID LIKEADFKIE LEIQTFDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.09691
Match:	1ihjA
Description:	Inad
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.566291652083235	bayes_pls_golite062009
protein binding	0.52823753548825	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: