YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15825840, gi\|...
Organism:	Homo sapiens
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15825840, gi|....

Description	E-value	Query Range	Subject Range
gi\|114601993 - gi\|114601993\|ref\|XP_001171940.1\| PREDICTED: catenin, alpha 1 isoform 16 [Pan troglodytes]	336.0	[0..1]	[256..377]
gi\|68355250 - gi\|68355250\|ref\|XP_695886.1\| PREDICTED: similar to catenin, alpha 2 [Danio rerio]	332.0	[0..1]	[256..46]
gi\|119619970, gi... - gi\|31873730\|emb\|CAD97832.1\| hypothetical protein [Homo sapiens], gi\|119619970\|gb\|EAW99564.1\| catenin...	331.0	[0..1]	[256..54]
gi\|109103591 - gi\|109103591\|ref\|XP_001112889.1\| PREDICTED: catenin (cadherin-associated protein), alpha 2 isoform 1...	331.0	[0..1]	[256..409]
CTNA1_RABIT - Catenin alpha-1 OS=Oryctolagus cuniculus GN=CTNNA1 PE=3 SV=1	330.0	[0..1]	[256..378]
gi\|109473731 - gi\|109473731\|ref\|XP_001070677.1\| PREDICTED: similar to Alpha-2 catenin (Alpha-catenin-related protei...	329.0	[0..1]	[256..388]

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Predicted Domain #1

Region A:
Residues: [1-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLRRQLRKAV XDHVSDSFLE TNVPLLVLIE AAKNGNEKEV KEYAQVFREH ANKLIEVANL  60
   61 ACSISNNEEG VKLVRXSASQ LEALCPQVIN AALALAAKPQ SKLAQENXDL FKEQWEKQVR 120
  121 VLTDAVDDIT SIDDFLAVSE NHILEDVNKC VIALQEKDVD GLDRTAGAIR GRAARVIHVV 180
  181 TSEXDNYEPG VYTEKVLEAT KLLSNTVXPR FTEQVEAAVE ALSSDPAQPX DENEFIDASR 240
  241 LVYDGIRDIR KAVLXI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.0
Match:	1h6gA
Description:	alpha-catenin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits