YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|83755026, gi\|...
Organism:	Mus musculus
Length:	263 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|83755026, gi|....

Description	E-value	Query Range	Subject Range
TPK1_MOUSE - Thiamin pyrophosphokinase 1 OS=Mus musculus GN=Tpk1 PE=1 SV=1	323.0	[0..21]	[263..1]
gi\|46250253 - gi\|46250253\|gb\|AAH68460.1\| Thiamin pyrophosphokinase 1 [Homo sapiens]	319.0	[0..21]	[263..1]
gi\|114616588 - gi\|114616588\|ref\|XP_519461.2\| PREDICTED: thiamin pyrophosphokinase 1 [Pan troglodytes]	317.0	[0..21]	[263..1]
TPK1_BOVIN - Thiamin pyrophosphokinase 1 OS=Bos taurus GN=TPK1 PE=2 SV=1	311.0	[0..21]	[263..1]
gi\|109473428 - gi\|109473428\|ref\|XP_001073146.1\| PREDICTED: similar to Thiamin pyrophosphokinase 1 (Thiamine pyropho...	284.0	[0..35]	[263..58]
gi\|89272021, gi\|... - gi\|89272021\|emb\|CAJ83166.1\| thiamin pyrophosphokinase 1 [Xenopus tropicalis], gi\|62857411\|ref\|NP_001...	282.0	[0..21]	[262..1]
gi\|109068707 - gi\|109068707\|ref\|XP_001094591.1\| PREDICTED: similar to thiamin pyrophosphokinase 1 [Macaca mulatta]	276.0	[0..21]	[263..94]

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Predicted Domain #1

Region A:
Residues: [1-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSHHHHHH SSGLVPRGSH MEHAFTPLEP LLPTGNLKYC LVVLNQPLDA RFRHLWKKAL  60
   61 LRACADGGAN HLYDLTEGER ESFLPEFVSG DFDSIRPEVK EYYTKKGCDL ISTPDQDHTD 120
  121 FTKCLQVLQR KIEEKELQVD VIVTLGGLGG RFDQIMASVN TLFQATHITP VPIIIIQKDS 180
  181 LIYLLQPGKH RLHVDTGMEG SWCGLIPVGQ PCNQVTTTGL KWNLTNDVLG FGTLVSTSNT 240
  241 YDGSGLVTVE TDHPLLWTMA IKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.39794
Match:	1ig3A
Description:	Thiamin pyrophosphokinase, substrate-binding domain; Thiamin pyrophosphokinase, catalytic domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits