YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|14719785
Organism:	Homo sapiens
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|14719785.

Description	E-value	Query Range	Subject Range
gi\|2815616 - gi\|2815616\|gb\|AAB97886.1\| apolipoprotein a [Papio hamadryas]	136.0	[0..1]	[83..101]
gi\|114610168 - gi\|114610168\|ref\|XP_001145279.1\| PREDICTED: similar to apolipoprotein a [Pan troglodytes]	136.0	[0..1]	[83..145]
gi\|1806583 - gi\|1806583\|gb\|AAC48717.1\| plasminogen	133.0	[0..1]	[83..378]
gi\|47222714 - gi\|47222714\|emb\|CAG00148.1\| unnamed protein product [Tetraodon nigroviridis]	132.0	[0..1]	[81..290]
PLMN_BOVIN - Plasminogen OS=Bos taurus GN=PLG PE=1 SV=2	132.0	[0..1]	[82..383]
gi\|113430891 - gi\|113430891\|ref\|XP_001133644.1\| PREDICTED: similar to lipoprotein Lp(a) [Homo sapiens]	132.0	[0..1]	[83..16]
PLMN_PIG - Plasminogen OS=Sus scrofa GN=PLG PE=1 SV=3	132.0	[0..1]	[83..376]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DCYHGDGQSY RGSFSTTVTG RTCQSWSSMT PHWHQRTTEY YPNGGLTRNY CRNPDAEIRP  60
   61 WCYTMDPSVR WEYCNLTQCP VME

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1jfnA
Description:	Apolipoprotein A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits