YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|14719769, gi\|...
Organism:	Escherichia coli
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|14719769, gi|....

Description	E-value	Query Range	Subject Range
gi\|62128629, gi\|... - gi\|62180996\|ref\|YP_217413.1\| cell division protein ZipA [Salmonella enterica subsp. enterica serovar...	199.0	[0..1]	[140..202]
ZIPA_SALCH - Cell division protein ZipA homolog OS=Salmonella choleraesuis GN=zipA PE=3 SV=2 ZIPA_SALCH - Cell division protein ZipA OS=Salmonella choleraesuis (strain SC-B67) GN=zipA PE=3 SV=2 ZIPA_SALCH - Cell division protein zipA homolog OS=Salmonella choleraesuis GN=zipA PE=3 SV=2	197.0	[0..1]	[140..189]
gi\|77979159 - gi\|77979159\|ref\|ZP_00834580.1\| COG3115: Cell division protein [Yersinia intermedia ATCC 29909]	197.0	[0..1]	[140..185]
gi\|213850351 - gi\|213850351\|ref\|ZP_03381249.1\| cell division protein ZipA [Salmonella enterica subsp. enterica sero... gi\|214003201 - gi\|214003201\|ref\|ZP_03413936.1\| cell division protein ZipA [Salmonella enterica subsp. enterica sero... gi\|238912843 - gi\|238912843\|ref\|ZP_04656680.1\| cell division protein ZipA [Salmonella enterica subsp. enterica sero... ZIPA_SALPA - Cell division protein ZipA homolog OS=Salmonella paratyphi A GN=zipA PE=3 SV=1 gi\|205359216, gi... - gi\|205359216\|ref\|ZP_02668126.2\| cell division protein ZipA [Salmonella enterica subsp. enterica sero... ZIPA_SALEP - Cell division protein ZipA OS=Salmonella enteritidis PT4 (strain P125109) GN=zipA PE=3 SV=1 ZIPA_SALTY - Cell division protein ZipA homolog OS=Salmonella typhimurium GN=zipA PE=3 SV=1 gi\|213424269 - gi\|213424269\|ref\|ZP_03357113.1\| cell division protein ZipA [Salmonella enterica subsp. enterica sero... gi\|213650851 - gi\|213650851\|ref\|ZP_03380904.1\| cell division protein ZipA [Salmonella enterica subsp. enterica sero... gi\|197243782, gi... - gi\|197265527\|ref\|ZP_03165601.1\| cell division protein ZipA [Salmonella enterica subsp. enterica sero... ZIPA_SALPK - Cell division protein ZipA OS=Salmonella paratyphi A (strain AKU_12601) GN=zipA PE=3 SV=1 ZIPA_SALDC - Cell division protein ZipA OS=Salmonella dublin (strain CT_02021853) GN=zipA PE=3 SV=1 ZIPA_SALTY - Cell division protein zipA homolog OS=Salmonella typhimurium GN=zipA PE=3 SV=1 gi\|199604530, gi... - gi\|200387432\|ref\|ZP_03214044.1\| cell division protein ZipA [Salmonella enterica subsp. enterica sero... gi\|205333528, gi... - gi\|205333528\|gb\|EDZ20292.1\| cell division protein ZipA [Salmonella enterica subsp. enterica serovar ... gi\|205349641, gi... - gi\|205349641\|gb\|EDZ36272.1\| cell division protein ZipA [Salmonella enterica subsp. enterica serovar ... ZIPA_SALHS - Cell division protein ZipA OS=Salmonella heidelberg (strain SL476) GN=zipA PE=3 SV=1 gi\|194470410, gi... - gi\|194470410\|ref\|ZP_03076394.1\| cell division protein ZipA [Salmonella enterica subsp. enterica sero... ZIPA_SALTI - Cell division protein ZipA OS=Salmonella typhi GN=zipA PE=3 SV=1 ZIPA_SALTY - Cell division protein ZipA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=zipA P... ZIPA_SALPA - Cell division protein ZipA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=zipA PE=3 SV=1 ZIPA_SALTI - Cell division protein zipA homolog OS=Salmonella typhi GN=zipA PE=3 SV=1 gi\|29136581, gi\|... - gi\|29140956\|ref\|NP_804298.1\| cell division protein ZipA [Salmonella enterica subsp. enterica serovar... gi\|16761348 - gi\|16761348\|ref\|NP_456965.1\| cell division protein ZipA [Salmonella enterica subsp. enterica serovar...	197.0	[0..1]	[140..189]
gi\|26109194, gi\|... - gi\|26248788\|ref\|NP_754828.1\| cell division protein ZipA [Escherichia coli CFT073], gi\|26109194\|gb\|AA...	196.0	[0..1]	[140..210]
gi\|21958273, gi\|... - gi\|22125388\|ref\|NP_668811.1\| cell division protein ZipA [Yersinia pestis KIM], gi\|21958273\|gb\|AAM850... gi\|45437256, gi\|... - gi\|45442392\|ref\|NP_993931.1\| cell division protein ZipA [Yersinia pestis biovar Microtus str. 91001]...	196.0	[0..1]	[139..199]
gi\|91211749, gi\|... - gi\|91211749\|ref\|YP_541735.1\| cell division protein ZipA [Escherichia coli UTI89], gi\|91073323\|gb\|ABE...	196.0	[0..1]	[140..210]
gi\|77634536 - gi\|77634536\|ref\|ZP_00796634.1\| COG3115: Cell division protein [Yersinia pestis Angola] ZIPA_YERP3 - Cell division protein ZipA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=zipA PE... gi\|167421339, gi... - gi\|167421339\|ref\|ZP_02313092.1\| cell division protein ZipA [Yersinia pestis biovar Orientalis str. M... gi\|167056442, gi... - gi\|167424560\|ref\|ZP_02316313.1\| cell division protein ZipA [Yersinia pestis biovar Mediaevalis str. ... gi\|166011198, gi... - gi\|166011198\|ref\|ZP_02232096.1\| cell division protein ZipA [Yersinia pestis biovar Antiqua str. E197... gi\|166212449, gi... - gi\|166212449\|ref\|ZP_02238484.1\| cell division protein ZipA [Yersinia pestis biovar Antiqua str. B420...	195.0	[0..1]	[139..185]
gi\|229838582, gi... - gi\|229838582\|ref\|ZP_04458741.1\| cell division protein involved in Z ring assembly [Yersinia pestis b... ZIPA_YERPE - Cell division protein ZipA OS=Yersinia pestis GN=zipA PE=3 SV=1 gi\|229687550, gi... - gi\|229899148\|ref\|ZP_04514291.1\| cell division protein involved in Z ring assembly [Yersinia pestis b... gi\|149365145, gi... - gi\|149365145\|ref\|ZP_01887180.1\| putative cell division protein [Yersinia pestis CA88-4125], gi\|14929... ZIPA_YERPP - Cell division protein ZipA OS=Yersinia pestis (strain Pestoides F) GN=zipA PE=3 SV=1 gi\|165926939, gi... - gi\|165926939\|ref\|ZP_02222771.1\| cell division protein ZipA [Yersinia pestis biovar Orientalis str. F... ZIPA_YERPG - Cell division protein ZipA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=zipA PE=3 SV=1 ZIPA_YERPA - Cell division protein ZipA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=zipA PE=3 SV=1 ZIPA_YERPY - Cell division protein ZipA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=zipA PE=3 S... gi\|167399701, gi... - gi\|167399701\|ref\|ZP_02305225.1\| cell division protein ZipA [Yersinia pestis biovar Antiqua str. UG05... ZIPA_YERPS - Cell division protein ZipA homolog OS=Yersinia pseudotuberculosis GN=zipA PE=3 SV=1 ZIPA_YERPB - Cell division protein ZipA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=zipA PE=3 SV... gi\|77629761 - gi\|77629761\|ref\|ZP_00792347.1\| COG3115: Cell division protein [Yersinia pseudotuberculosis IP 31758] ZIPA_YERPS - Cell division protein ZipA OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=zipA PE=3 S... ZIPA_YERPN - Cell division protein ZipA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=zipA PE=3 SV=1 gi\|16123171, gi\|... - gi\|218930039\|ref\|YP_002347914.1\| cell division protein ZipA [Yersinia pestis CO92], gi\|16123171\|ref\|...	195.0	[0..1]	[139..186]
ZIPA_PSEPK - Cell division protein ZipA OS=Pseudomonas putida (strain KT2440) GN=zipA PE=3 SV=2	195.0	[0..2]	[138..154]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRKEAVIIMN VAAHHGSELN GELLLNSIQQ AGFIFGDMNI YHRHLSPDGS GPALFSLANM  60
   61 VKPGTFDPEM KDFTTPGVTI FMQVPSYGDE LQLFKLMLQS AQHIADEVGG VVLDDQRRMM 120
  121 TPQKLREYQD IIREVKDANA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.30103
Match:	1y2gA
Description:	Crystal STructure of ZipA in complex with an inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits