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View Structure Prediction Details

Protein: gi|14719497, gi|...
Organism: Homo sapiens
Length: 115 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|14719497, gi|....

Description E-value Query
Range		 Subject
Range
TTHY_RAT - Transthyretin OS=Rattus norvegicus GN=Ttr PE=1 SV=1
 171.0 [0..1] [115..30]
TTHY_CROPO - Transthyretin OS=Crocodylus porosus GN=TTR PE=1 SV=1
 170.0 [0..1] [115..33]
TTHY_MACEU - Transthyretin OS=Macropus eugenii GN=TTR PE=2 SV=1
 170.0 [0..1] [115..32]
TTHY_TILRU - Transthyretin OS=Tiliqua rugosa GN=TTR PE=1 SV=1
 170.0 [0..1] [115..33]
TTHY_MONDO - Transthyretin OS=Monodelphis domestica GN=TTR PE=1 SV=1
 169.0 [0..1] [115..32]
TTHY_PETBR - Transthyretin OS=Petaurus breviceps GN=TTR PE=1 SV=1
 169.0 [0..1] [115..32]
TTHY_ERIEU - Transthyretin OS=Erinaceus europaeus GN=TTR PE=2 SV=1
 169.0 [0..1] [115..28]

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Predicted Domain #1
Region A:
Residues: [1-115] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CPLMVKVLDA VRGSPAINVA VHVFRKAADD TWEPFASGKT SESGELHGLT TEEEFVEGIY  60
   61 KVEIDTKSYW KALGISPFHE HAEVVFTAND SGPRRYTIAA LLSPYSYSTM AVVTN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.69897
Match: 1ie4A
Description: Transthyretin (prealbumin)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.336409111868087 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle