YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|14488759
Organism:	Homo sapiens
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|14488759.

Description	E-value	Query Range	Subject Range
gi\|76659146 - gi\|76659146\|ref\|XP_595609.2\| PREDICTED: similar to synapse-associated protein 102 [Bos taurus]	114.0	[0..3]	[91..635]
gi\|148682220, gi... - gi\|28972680\|dbj\|BAC65756.1\| mKIAA1232 protein [Mus musculus], gi\|148682220\|gb\|EDL14167.1\| discs, lar...	114.0	[0..3]	[91..516]
gi\|148227378, gi... - gi\|39645065\|gb\|AAH63721.1\| Nherf-2 protein [Xenopus laevis], gi\|37904694\|gb\|AAP57205.1\| NHE3 kinase ...	114.0	[0..1]	[91..5]
gi\|1517938 - gi\|1517938\|gb\|AAB48561.1\| isoform of PSD-95/SAP90 [Rattus norvegicus]	113.0	[0..3]	[91..401]
gi\|62088236 - gi\|62088236\|dbj\|BAD92565.1\| synapse-associated protein 102 variant [Homo sapiens]	113.0	[0..3]	[91..483]
gi\|109131117 - gi\|109131117\|ref\|XP_001085782.1\| PREDICTED: similar to synapse-associated protein 102 [Macaca mulatt...	113.0	[0..3]	[91..498]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RMLPRLCCLE KGPNGYGFHL HGEKGKLGQY IRLVEPGSPA EKAGLLAGDR LVEVNGENVE  60
   61 KETHQQVVSR IRAALNAVRL LVVDPETDEQ L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.522879
Match:	1g9oA
Description:	Na+/H+ exchanger regulatory factor, NHERF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.566291652083235	bayes_pls_golite062009
protein binding	0.52823753548825	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: