YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12084648, gi\|...
Organism:	Homo sapiens
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12084648, gi|....

Description	E-value	Query Range	Subject Range
gi\|67969107 - gi\|67969107\|dbj\|BAE00908.1\| unnamed protein product [Macaca fascicularis]	179.0	[0..1]	[142..1]
BIRC5_RAT - Baculoviral IAP repeat-containing protein 5 OS=Rattus norvegicus GN=Birc5 PE=2 SV=1	173.0	[0..1]	[141..1]
gi\|60830680, gi\|... - gi\|60830680\|gb\|AAX36940.1\| baculoviral IAP repeat-containing 5 [synthetic construct], gi\|60654171\|gb...	172.0	[0..1]	[142..1]
BIRC5_MOUSE - Baculoviral IAP repeat-containing protein 5 OS=Mus musculus GN=Birc5 PE=1 SV=1	172.0	[0..1]	[140..1]
gi\|59859878, gi\|... - gi\|59859878\|ref\|NP_001159.2\| baculoviral IAP repeat-containing protein 5 isoform 1 [Homo sapiens], g...	172.0	[0..1]	[142..1]
BIRC5_CANFA, BIR... - (Q8I009) Baculoviral IAP repeat-containing protein 5 (Apoptosis inhibitor survivin), (Q8I009) Baculo...	171.0	[0..1]	[142..1]
gi\|114670699, gi... - gi\|114670699\|ref\|XP_001156931.1\| PREDICTED: baculoviral IAP repeat-containing protein 5 isoform 6 [P...	171.0	[0..1]	[142..1]
gi\|109118487 - gi\|109118487\|ref\|XP_001108164.1\| PREDICTED: similar to baculoviral IAP repeat-containing protein 5 i...	170.0	[0..1]	[142..1]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAPTLPPAW QPFLKDHRIS TFKNWPFLEG CACTPERMAE AGFIHCPTEN EPDMAQCFFC  60
   61 FKELEGWEPD DDPIEEHKKH SSGCAFLSVK KQFEELTLGE FLKLDRERAK NKIAKETNNK 120
  121 KKEFEETAKK VRRAIEQLAA MD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.39794
Match:	1e31A
Description:	Anti-apoptotic protein survivin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits