YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|14278480
Organism:	Homo sapiens
Length:	61 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|14278480.

Description	E-value	Query Range	Subject Range
gi\|49903495, gi\|... - gi\|52346016\|ref\|NP_001005051.1\| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis], gi\|...	131.0	[0..1]	[60..557]
gi\|73974154 - gi\|73974154\|ref\|XP_857212.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...	131.0	[0..1]	[60..540]
PABPB_XENLA - Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b PE=2 SV=1	131.0	[0..1]	[60..556]
gi\|50759870 - gi\|50759870\|ref\|XP_417821.1\| PREDICTED: similar to PABPC4 protein [Gallus gallus]	131.0	[0..1]	[60..972]
PABP1_BOVIN - Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1 gi\|109087089 - gi\|109087089\|ref\|XP_001098239.1\| PREDICTED: poly(A) binding protein, cytoplasmic 1 isoform 2 [Macaca... gi\|123993665, gi... - gi\|168278070\|dbj\|BAG11013.1\| polyadenylate-binding protein 1 [synthetic construct], gi\|123999981\|gb\|... gi\|194036975 - gi\|194036975\|ref\|XP_001927782.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-bind... PABPC1 - poly(A) binding protein, cytoplasmic 1 gi\|73974130, gi\|... - gi\|73974178\|ref\|XP_857695.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...	131.0	[0..1]	[60..558]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HRQALGERLY PRVQAMQPAF ASKITGMLLE LSPAQLLLLL ASEDSLRARV DEAMELIIAH  60
   61 G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	1g9lA
Description:	poly(A) binding protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits