YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|14277761, gi\|...
Organism:	Homo sapiens
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|14277761, gi|....

Description	E-value	Query Range	Subject Range
gi\|50746337 - gi\|50746337\|ref\|XP_420449.1\| PREDICTED: similar to Arfaptin 1 (ADP-ribosylation factor interacting p...	335.0	[0..1]	[224..93]
gi\|62955267, gi\|... - gi\|62955267\|ref\|NP_001017649.1\| ADP-ribosylation factor interacting protein 2b [Danio rerio], gi\|622...	333.0	[0..1]	[224..132]
ENSPTRT00000030708 - null ARFIP1 - ADP-ribosylation factor interacting protein 1	319.0	[0..1]	[224..150]
gi\|57096847 - gi\|57096847\|ref\|XP_532691.1\| PREDICTED: similar to Arfaptin-1 (ADP-ribosylation factor interacting p...	319.0	[0..1]	[224..150]
gi\|76638245 - gi\|76638245\|ref\|XP_583986.2\| PREDICTED: similar to Arfaptin-1 (ADP-ribosylation factor-interacting p...	316.0	[0..1]	[224..119]
gi\|47216282 - gi\|47216282\|emb\|CAF96578.1\| unnamed protein product [Tetraodon nigroviridis]	313.0	[0..4]	[223..174]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSRTVDLELE LQIELLRETK RKYESVLQLG RALTAHLYSL LQTQHALGDA FADLSQKSPE  60
   61 LQEEFGYNAE TQKLLCKNGE TLLGAVNFFV SSINTLVTKT MEDTLMTVKQ YEAARLEYDA 120
  121 YRTDLEELSL GPRDAGTRGR LESAQATFQA HRDKYEKLRG DVAIKLKFLE ENKIKVMHKQ 180
  181 LLLFHNAVSA YFAGNQKQLE QTLQQFNIKL RPPGAEKPSW LEEQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.522879
Match:	1i49A
Description:	Arfaptin, Rac-binding fragment
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.171962044848065	bayes_pls_golite062009
protein binding	0.04256104607293	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: