YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157835180, gi...
Organism:	Homo sapiens
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157835180, gi....

Description	E-value	Query Range	Subject Range
gi\|62898457 - gi\|62898457\|dbj\|BAD97168.1\| translation factor sui1 homolog [Homo sapiens]	163.0	[0..14]	[126..1]
gi\|94365786, gi\|... - gi\|94365786\|ref\|XP_997192.1\| PREDICTED: similar to suppressor of initiator codon mutations, related ...	163.0	[0..14]	[125..130]
gi\|114568264 - gi\|114568264\|ref\|XP_001145943.1\| PREDICTED: similar to isolog of yeast sui1 and rice gos2; putative ...	160.0	[0..16]	[126..41]
gi\|109115342 - gi\|109115342\|ref\|XP_001092971.1\| PREDICTED: similar to Eukaryotic translation initiation factor 1 (e...	159.0	[0..14]	[126..263]
gi\|50760847 - gi\|50760847\|ref\|XP_418159.1\| PREDICTED: similar to Eukaryotic translation initiation factor 1 (eIF1)...	157.0	[0..14]	[126..253]
gi\|109474639, gi... - gi\|109476104\|ref\|XP_001070988.1\| PREDICTED: similar to suppressor of initiator codon mutations, rela...	157.0	[0..14]	[126..90]
gi\|60653351, gi\|... - gi\|60653353\|gb\|AAX29371.1\| putative translation initiation factor [synthetic construct], gi\|60653351...	154.0	[0..14]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGSHHHHHH TDPMSAIQNL HSFDPFADAS KGDDLLPAGT EDYIHIRIQQ RNGRKTLTTV  60
   61 QGIADDYDKK KLVKAFKKKF ACNGTVIEHP EYGEVIQLQG DQRKNICQFL VEIGLAKDDQ 120
  121 LKVHGF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.0
Match:	2if1A
Description:	HUMAN TRANSLATION INITIATION FACTOR EIF1, NMR, 29 STRUCTURES
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits