YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|10120837, gi\|...
Organism:	Homo sapiens
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10120837, gi|....

Description	E-value	Query Range	Subject Range
gi\|50758126 - gi\|50758126\|ref\|XP_415772.1\| PREDICTED: similar to Ap2b1 protein [Gallus gallus]	441.0	[0..12]	[258..832]
gi\|73966793 - gi\|73966793\|ref\|XP_867790.1\| PREDICTED: similar to Adapter-related protein complex 2 beta 1 subunit ...	437.0	[0..12]	[258..664]
AP2B1 - adaptor-related protein complex 2, beta 1 subunit gi\|149724034 - gi\|149724034\|ref\|XP_001503976.1\| PREDICTED: similar to beta-chain clathrin associated protein comple... AP2B1_RAT - AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1 gi\|73966773 - gi\|73966773\|ref\|XP_867698.1\| PREDICTED: similar to Adapter-related protein complex 2 beta 1 subunit ... gi\|114668040, gi... - gi\|114668042\|ref\|XP_001174162.1\| PREDICTED: adaptor-related protein complex 2, beta 1 subunit isofor... gi\|168277614 - gi\|168277614\|dbj\|BAG10785.1\| AP-2 complex subunit beta-1 [synthetic construct]	436.0	[0..12]	[258..691]
AP2B1_MOUSE - AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1	435.0	[0..12]	[258..691]
gi\|55731136 - gi\|55731136\|emb\|CAH92283.1\| hypothetical protein [Pongo abelii] gi\|197098064 - gi\|197098064\|ref\|NP_001126334.1\| adaptor-related protein complex 2, beta 1 subunit [Pongo abelii]	435.0	[0..12]	[258..705]
gi\|114668052, gi... - gi\|114668054\|ref\|XP_001174101.1\| PREDICTED: adaptor-related protein complex 2, beta 1 subunit isofor... gi\|33504652, gi\|... - gi\|33504652\|gb\|AAQ20044.1\| beta adaptin subunit [Homo sapiens], gi\|119600545\|gb\|EAW80139.1\| adaptor-...	435.0	[0..12]	[258..634]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSHHHHHH SSGLVPRGSH MGMAPGGYVA PKAVWLPAVK AKGLEISGTF THRQGHIYME  60
   61 MNFTNKALQH MTDFAIQFNK NSFGVIPSTP LAIHTPLMPN QSIDVSLPLN TLGPVMKMEP 120
  121 LNNLQVAVKN NIDVFYFSCL IPLNVLFVED GKMERQVFLA TWKDIPNENE LQFQIKECHL 180
  181 NADTVSSKLQ NNNVYTIAKR NVEGQDMLYQ SLKLTNGIWI LAELRIQPGN PNYTLSLKCR 240
  241 APEVSQYIYQ VYDSILKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	115.0
Match:	1e42A
Description:	Beta2-adaptin AP2 ear domain, N-terminal subdomain; Beta2-adaptin AP2, C-terminal subdomain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits