YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|5821937
Organism:	Homo sapiens
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5821937.

Description	E-value	Query Range	Subject Range
gi\|18157432 - gi\|18157432\|dbj\|BAB39747.3\| protein kinase raf 1 [Seriola quinqueradiata]	141.0	[0..1]	[77..53]
gi\|47229346 - gi\|47229346\|emb\|CAG04098.1\| unnamed protein product [Tetraodon nigroviridis]	140.0	[0..1]	[77..61]
gi\|83921659, gi\|... - gi\|83921659\|ref\|NP_001033078.1\| serine/threonine protein kinase RAF1 [Takifugu rubripes], gi\|5679827...	140.0	[0..1]	[77..79]
gi\|73984574 - gi\|73984574\|ref\|XP_859313.1\| PREDICTED: similar to RAF proto-oncogene serine/threonine-protein kinas...	138.0	[0..1]	[77..55]
gi\|76676042 - gi\|76676042\|ref\|XP_880117.1\| PREDICTED: similar to RAF proto-oncogene serine/threonine-protein kinas...	138.0	[0..1]	[77..55]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNTIRVFLPN KQRTVVNVRN GMSLHDCLMK ALKVRGLQPE CCAVFRLLHE HKGKKARLDW  60
   61 NTDAASLIGE ELQVDFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1rrbA
Description:	THE RAS-BINDING DOMAIN OF RAF-1 FROM RAT, NMR, 1 STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0934358341245259	bayes_pls_golite062009
protein binding	0.03789551947602	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: