YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11513939
Organism:	Escherichia coli
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11513939.

Description	E-value	Query Range	Subject Range
gi\|187430071, gi... - gi\|187733079\|ref\|YP_001882552.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Shigella... gi\|81247613, gi\|... - gi\|82546202\|ref\|YP_410149.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Shigella boy...	168.0	[0..1]	[192..1]
gi\|31615326 - gi\|31615326\|pdb\|1HJJ\|A Chain A, Biochemical And Structural Analysis Of The Molybdenum Cofactor Biosy...	167.0	[0..1]	[192..1]
gi\|170083330, gi... - gi\|170083330\|ref\|YP_001732650.1\| molybdopterin-guanine dinucleotide synthase [Escherichia coli str. ... EG11829 - molybdopterin-guanine dinucleotide synthase / Molybdopterin guanine dinucleotide synthesis; chlorate... gi\|89110170, gi\|... - gi\|89110170\|ref\|AP_003950.1\| molybdopterin-guanine dinucleotide synthase [Escherichia coli str. K-12... EG11829 - molybdopterin-guanine dinucleotide synthase / Molybdopterin guanine dinucleotide synthesis; chlorate... gi\|254290559, gi... - gi\|254290559\|ref\|YP_003056307.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escheric... gi\|254163809, gi... - gi\|254163809\|ref\|YP_003046917.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escheric... gi\|238861806, gi... - gi\|238902925\|ref\|YP_002928721.1\| molybdopterin-guanine dinucleotide synthase [Escherichia coli BW295... gi\|242379395, gi... - gi\|251787122\|ref\|YP_003001426.1\| hypothetical protein B21_03692 [Escherichia coli BL21], gi\|24237939... gi\|194420905, gi... - gi\|194440162\|ref\|ZP_03072209.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherich... gi\|188496382, gi... - gi\|188496382\|ref\|ZP_03003652.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherich... MOBA_ECOLI - Molybdopterin-guanine dinucleotide biosynthesis protein A (Protein FA) - Escherichia coli	167.0	[0..1]	[192..1]
gi\|73857840, gi\|... - gi\|74314363\|ref\|YP_312782.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Shigella son...	165.0	[0..1]	[192..1]
gi\|24054421, gi\|... - gi\|24115146\|ref\|NP_709656.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Shigella fle... gi\|30064853, gi\|... - gi\|30064853\|ref\|NP_839024.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Shigella fle...	165.0	[0..1]	[192..1]
gi\|56130098, gi\|... - gi\|56415841\|ref\|YP_152916.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Salmonella e... gi\|197364771, gi... - gi\|197364771\|ref\|YP_002144408.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Salmonel...	165.0	[0..1]	[193..1]
gi\|28898271, gi\|... - gi\|28898271\|ref\|NP_797876.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Vibrio parah... gi\|28806488 - gi\|28806488\|dbj\|BAC59760.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Vibrio paraha...	165.0	[0..1]	[193..13]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLMTTITGV VLAGGKARRM GGVDKGLLEL NGKPLWQHVA DALMTQLSHV VVNANRHQEI  60
   61 YQASGLKVIE DSLADYPGPL AGMLSVMQQE AGEWFLFCPC DTPYIPPDLA ARLNHQRKDA 120
  121 PVVWVHDGER DHPTIALVNR AIEPLLLEYL QAGERRVMVF MRLAGGHAVD FSDHKDAFVN 180
  181 VNTPEELARW QEKRSHHHHH H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.0
Match:	1e5kA
Description:	Molybdenum cofactor biosynthesis protein MobA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.25720704697246	bayes_pls_golite062009
transferase activity	1.67251862595728	bayes_pls_golite062009
nucleotidyltransferase activity	0.67147527259372	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	0.140401836041937	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.120443376947599	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: