YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11513844
Organism:	Homo sapiens
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11513844.

Description	E-value	Query Range	Subject Range
FXN - frataxin	191.0	[0..3]	[127..86]
gi\|74195305 - gi\|74195305\|dbj\|BAE28375.1\| unnamed protein product [Mus musculus]	190.0	[0..4]	[125..84]
gi\|109111727 - gi\|109111727\|ref\|XP_001093449.1\| PREDICTED: similar to frataxin isoform 1 preproprotein [Macaca mula...	189.0	[0..3]	[127..86]
gi\|109463707 - gi\|109463707\|ref\|XP_001078791.1\| PREDICTED: similar to Frataxin, mitochondrial precursor (Fxn) [Ratt...	189.0	[0..4]	[125..85]
FRDA_MACFA - Frataxin, mitochondrial OS=Macaca fascicularis GN=FXN PE=2 SV=1	186.0	[0..3]	[127..86]
gi\|76624359 - gi\|76624359\|ref\|XP_582022.2\| PREDICTED: similar to frataxin isoform 1 preproprotein [Bos taurus]	184.0	[0..6]	[126..148]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHMGSLDET TYERLAEETL DSLAEFFEDL ADKPYTFEDY DVSFGSGVLT VKLGGDLGTY  60
   61 VINKQTPNKQ IWLSSPSSGP KRYDWTGKNW VYSHDGVSLH ELLAAELTKA LKTKLDLSSL 120
  121 AYSGKDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.221849
Match:	1ekgA
Description:	C-terminal domain of frataxin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits