YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|10835824
Organism:	Homo sapiens
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10835824.

Description	E-value	Query Range	Subject Range
gi\|60834962 - gi\|60834962\|gb\|AAX37118.1\| oncostatin M [synthetic construct]	348.0	[0..1]	[187..26]
OSM - oncostatin M gi\|109451408, gi... - gi\|208965308\|dbj\|BAG72668.1\| oncostatin M [synthetic construct], gi\|123998145\|gb\|ABM86674.1\| oncosta... HGNC:8506\|MIM:16... - M, M	348.0	[0..1]	[187..26]
gi\|114685834 - gi\|114685834\|ref\|XP_001136178.1\| PREDICTED: similar to Oncostatin M precursor (OSM) [Pan troglodytes...	347.0	[0..1]	[187..26]
gi\|109093951 - gi\|109093951\|ref\|XP_001110148.1\| PREDICTED: similar to oncostatin M precursor [Macaca mulatta]	323.0	[0..1]	[187..26]
gi\|73995418 - gi\|73995418\|ref\|XP_854737.1\| PREDICTED: similar to oncostatin M precursor [Canis familiaris]	289.0	[0..2]	[187..45]
ONCM_RAT - Oncostatin-M OS=Rattus norvegicus GN=Osm PE=2 SV=1 gi\|55741439 - ref\|NP_001006962.1\| oncostatin M [Rattus norvegicus]	279.0	[0..6]	[187..29]
gi\|74212785 - gi\|74212785\|dbj\|BAE33358.1\| unnamed protein product [Mus musculus]	249.0	[0..21]	[187..43]
ONCM_BOVIN - Oncostatin-M OS=Bos taurus GN=OSM PE=3 SV=1	248.0	[0..2]	[187..24]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAIGSCSKEY RVLLGQLQKQ TDLMQDTSRL LDPYIRIQGL DVPKLREHCR ERPGAFPSEE  60
   61 TLRGLGRRGF LQTLNATLGC VLHRLADLEQ RLPKAQDLER SGLNIEDLEK LQMARPNILG 120
  121 LRNNIYCMAQ LLDNSDTAEP TKAGRGASQP PTPTPASDAF QRKLEGCRFL HGYHRFMHSV 180
  181 GRVFSKW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	1evsA
Description:	Oncostatin M
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.690795394803185	bayes_pls_golite062009
protein binding	0.6394379925035	bayes_pls_golite062009
receptor binding	0.394045730859399	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: