YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114794284, gi...
Organism:	Homo sapiens
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114794284, gi....

Description	E-value	Query Range	Subject Range
gi\|6319130, gi\|2... - gi\|6319130\|gb\|AAF07175.1\|AF192548_1 tumor necrosis factor receptor-like protein ZTNFR9 [Homo sapiens...	118.0	[0..1]	[130..54]
gi\|61364962 - gi\|61364962\|gb\|AAX42632.1\| tumor necrosis factor receptor superfamily member 10b [synthetic construc...	117.0	[0..1]	[130..54]
gi\|114619242 - gi\|114619242\|ref\|XP_001158074.1\| PREDICTED: tumor necrosis factor receptor superfamily, member 10b i...	117.0	[0..1]	[130..54]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALITQQDLAP QQRAAPQQKR SSPSEGLCPP GHHISEDGRD CISCKYGQDY STHWNDLLFC  60
   61 LRCTRCDSGE VELSPCTTTR NTVCQCEEGT FREEDSPEMC RKCRTGCPRG MVKVGDCTPW 120
  121 SDIECVHKES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.045757
Match:	1za3R
Description:	The crystal structure of the YSd1 Fab bound to DR5
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.643682637675745	bayes_pls_golite062009
protein binding	0.39277228108791	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: