YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|10120530
Organism:	Homo sapiens
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10120530.

Description	E-value	Query Range	Subject Range
gi\|114663101 - gi\|114663101\|ref\|XP_511022.2\| PREDICTED: similar to tumor necrosis factor receptor type 1 associated...	312.0	[0..1]	[179..90]
gi\|808915 - gi\|808915\|gb\|AAA98482.1\| tumor necrosis factor receptor type 1 associated protein	302.0	[0..1]	[179..17]
gi\|30584427, gi\|... - gi\|60652789\|gb\|AAX29089.1\| TNFRSF1A-associated via death domain [synthetic construct], gi\|30584427\|g...	300.0	[0..1]	[179..1]
TRADD_BOVIN - Tumor necrosis factor receptor type 1-associated DEATH domain protein OS=Bos taurus GN=TRADD PE=2 SV...	293.0	[0..1]	[179..1]
gi\|73957525 - gi\|73957525\|ref\|XP_853998.1\| PREDICTED: similar to TNFRSF1A-associated via death domain isoform 1 [C...	281.0	[0..1]	[179..110]
gi\|109508659, gi... - gi\|34851593\|ref\|XP_341672.1\| PREDICTED: similar to TNFRSF1A-associated via death domain [Rattus norv...	279.0	[0..1]	[178..1]
TRADD_MOUSE - Tumor necrosis factor receptor type 1-associated DEATH domain protein OS=Mus musculus GN=Tradd PE=1 ...	276.0	[0..1]	[178..1]
gi\|50753615 - gi\|50753615\|ref\|XP_414067.1\| PREDICTED: similar to TNFRSF1A-associated via death domain isoform 1; t...	252.0	[0..11]	[164..25]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGQNGHEE WVGSAYLFVE SSLDKVVLSD AYAHPQQKVA VYRALQAALA ESGGSPDVLQ  60
   61 MLKIHRSDPQ LIVQLRFCGR QPCGRFLRAY REGALRAALQ RSLAAALAQH SVPLQLELRA 120
  121 GAERLDALLA DEERCLSCIL AQQPDRLRDE ELAELEDALR NLKCGSGARG GDGEVASAP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.154902
Match:	1f3vA
Description:	TRADD, N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits