YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9955246
Organism:	Mus musculus
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9955246.

Description	E-value	Query Range	Subject Range
gi\|68375706 - gi\|68375706\|ref\|XP_692326.1\| PREDICTED: similar to cell-adhesion protein alphaE catenin [Danio rerio...	265.0	[0..1]	[205..57]
gi\|114601993 - gi\|114601993\|ref\|XP_001171940.1\| PREDICTED: catenin, alpha 1 isoform 16 [Pan troglodytes]	264.0	[0..1]	[205..57]
gi\|109103591 - gi\|109103591\|ref\|XP_001112889.1\| PREDICTED: catenin (cadherin-associated protein), alpha 2 isoform 1...	262.0	[0..2]	[205..91]
CTNA1_RABIT - Catenin alpha-1 OS=Oryctolagus cuniculus GN=CTNNA1 PE=3 SV=1	261.0	[0..1]	[205..57]
gi\|109473731 - gi\|109473731\|ref\|XP_001070677.1\| PREDICTED: similar to Alpha-2 catenin (Alpha-catenin-related protei...	260.0	[0..2]	[205..70]

Back

Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAHVLAASVE QATENFLEKG DKIAKESQFL KEELVVAVED VRKQGDLXKS AAGEFADDPC  60
   61 SSVKRGNXVR AARALLSAVT RLLILADXAD VYKLLVQLKV VEDGILKLRN AGNEQDLGIQ 120
  121 YKALKPEVDK LNIXAAKRQQ ELKDVGNRDQ XAAARGILQK NVPILYTASQ ACLQHPDVAA 180
  181 YKANRDLIYK QLQQAVTGIS NAAQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.0
Match:	1dowA
Description:	alpha-catenin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.425289494704085	bayes_pls_golite062009
protein binding	0.19527989782766	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: