YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9955210
Organism:	Escherichia coli
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9955210.

Description	E-value	Query Range	Subject Range
gi\|192925798, gi... - gi\|75255337\|ref\|ZP_00727161.1\| hypothetical protein EcolE2_01004582 [Escherichia coli E22], gi\|19306... gi\|218350024, gi... - gi\|218692861\|ref\|YP_002405973.1\| conjugal transfer fertility inhibition protein FinO [Escherichia co... gi\|237702515, gi... - gi\|237702515\|ref\|ZP_04532996.1\| fertility inhibition protein [Escherichia sp. 3_2_53FAA], gi\|2269032... gi\|9507653, gi\|5... - gi\|9507653\|ref\|NP_052984.1\| conjugal transfer fertility inhibition protein FinO [Plasmid R100], gi\|5... gi\|91206387, gi\|... - gi\|91206387\|ref\|YP_538741.1\| fertility inhibition protein [Escherichia coli UTI89], gi\|91075838\|gb\|A... FINO2_ECOLX - Fertility inhibition protein OS=Escherichia coli GN=finO PE=3 SV=1 gi\|190906104, gi... - gi\|75238432\|ref\|ZP_00722429.1\| hypothetical protein EcolF_01003479 [Escherichia coli F11], gi\|191173...	180.0	[0..1]	[152..33]
gi\|151838 - gi\|151838\|gb\|AAA98316.1\| conjugative transfer co-repressor [Plasmid R65] FINO3_ECOLX - Fertility inhibition protein OS=Escherichia coli GN=finO PE=1 SV=1	179.0	[0..1]	[152..33]
gi\|187426795, gi... - gi\|75175446\|ref\|ZP_00695670.1\| hypothetical protein SboyB_01004516 [Shigella boydii BS512], gi\|18773...	173.0	[0..1]	[152..50]
gi\|13310749\|gb\|A... - fertility inhibition protein [Shigella flexneri] gi\|13449201, gi\|... - gi\|58045051\|gb\|AAW64821.1\| FinO [Shigella flexneri], gi\|13449201\|ref\|NP_085417.1\| conjugal transfer ...	171.0	[0..1]	[152..50]
gi\|75235031 - gi\|75235031\|ref\|ZP_00719296.1\| hypothetical protein EcolE1_01003173 [Escherichia coli E110019]	171.0	[0..1]	[152..33]
gi\|83586601, gi\|... - gi\|83586601\|ref\|ZP_00925234.1\| hypothetical protein Ecol1_01002256 [Escherichia coli 101-1], gi\|1944...	171.0	[0..1]	[152..33]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPKWKVKKQK LAEKAAREAE LTAKKAQARQ ALSIYLNLPT LDEAVNTLKP WWPGLFDGDT  60
   61 PRLLACGIRD VLLEDVAQRN IPLSHKKLRR AMKAITRSES YLCAMKAGAC RYDTEGYVTE 120
  121 HISQEEEVYA AERLDKIRRQ NRIKAELQAV LD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.30103
Match:	1dvoA
Description:	Repressor of bacterial conjugation FinO
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits