YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9257141, gi\|9...
Organism:	Homo sapiens
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9257141, gi|9....

Description	E-value	Query Range	Subject Range
gi\|18143317 - gi\|18143317\|dbj\|BAB79634.1\| flt3 ligand [Bos taurus]	283.0	[0..1]	[134..28]
gi\|118403294, gi... - gi\|94983828\|gb\|ABF50620.1\| fms-related tyrosine kinase 3 ligand [Ovis aries], gi\|118403294\|ref\|NP_00...	282.0	[0..1]	[134..28]
gi\|631146 - gi\|631146\|pir\|\|S43293 FLT3/FLK2 ligand (clone S109) - human	280.0	[0..1]	[134..27]
gi\|50979198, gi\|... - gi\|9367029\|gb\|AAF87088.1\|AF155148_1 Flt3 ligand [Canis familiaris], gi\|50979198\|ref\|NP_001003350.1\| ...	277.0	[0..1]	[134..27]
gi\|9367031, gi\|5... - gi\|9367031\|gb\|AAF87089.1\|AF155149_1 Flt3 ligand [Felis catus], gi\|57618988\|ref\|NP_001009842.1\| fms-r...	275.0	[0..1]	[134..27]

Back

Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQDCSFQHSP ISSDFAVKIR ELSDYLLQDY PVTVASNLQD DELCGGLWRL VLAQRWMERL  60
   61 KTVAGSKMQG LLERVNTEIH FVTKCAFQPP PSCLRFVQTN ISRLLQETSE QLVALKPWIT 120
  121 RQNFSRCLEL QCQP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.0
Match:	1eteA
Description:	Flt3 ligand
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.690795394803185	bayes_pls_golite062009
protein binding	0.6394379925035	bayes_pls_golite062009
receptor binding	0.394045730859399	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: