YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9256917
Organism:	Homo sapiens
Length:	170 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9256917.

Description	E-value	Query Range	Subject Range
gi\|47222748 - gi\|47222748\|emb\|CAG01715.1\| unnamed protein product [Tetraodon nigroviridis]	155.0	[0..5]	[169..458]
gi\|73956460 - gi\|73956460\|ref\|XP_855650.1\| PREDICTED: similar to agrin isoform 2 [Canis familiaris]	154.0	[0..3]	[170..1263]
AGRIN_RAT - Agrin OS=Rattus norvegicus GN=Agrn PE=1 SV=2	153.0	[0..1]	[170..1262]
gi\|76637785 - gi\|76637785\|ref\|XP_604151.2\| PREDICTED: similar to agrin [Bos taurus]	152.0	[0..12]	[170..1513]
gi\|55962182 - gi\|55962182\|emb\|CAI15575.1\| agrin [Homo sapiens]	151.0	[0..6]	[170..1239]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPAVHLSNGP GQEPIAVMTF DLTKITKTSS SFEVRTWDPE GVIFYGDTNP KDDWFMLGLR  60
   61 DGRPEIQLHN HWAQLTVGAG PRLDDGRWHQ VEVKMEGDSV LLEVDGEEVL RLRQVSGHPI 120
  121 MRIALGGLLF PASNLRLPLV PALDGCLRRD SWLDKQAEIS ASAPTSLRSC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	1d2sA
Description:	Sex hormone-binding globulin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits