YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6435687
Organism:	Homo sapiens
Length:	86 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6435687.

Description	E-value	Query Range	Subject Range
PKL1_RAT, PKN1_RAT - Serine/threonine-protein kinase N1 OS=Rattus norvegicus GN=Pkn1 PE=1 SV=1, (Q63433) Protein kinase C...	121.0	[0..1]	[86..13]
PKN1_MOUSE - Serine/threonine-protein kinase N1 OS=Mus musculus GN=Pkn1 PE=1 SV=3	120.0	[0..1]	[86..13]
gi\|91079240 - gi\|91079240\|ref\|XP_971016.1\| PREDICTED: similar to protein kinase N2 [Tribolium castaneum]	114.0	[0..1]	[86..33]
gi\|47223932 - gi\|47223932\|emb\|CAG06109.1\| unnamed protein product [Tetraodon nigroviridis]	113.0	[0..2]	[86..7]
gi\|50751352 - gi\|50751352\|ref\|XP_422357.1\| PREDICTED: similar to protein kinase C-like 2 [Gallus gallus]	110.0	[0..10]	[86..250]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WSLLEQLGLA GADLAAPGVQ QQLELERERL RREIRKELKL KEGAENLRRA TTDLGRSLGP  60
   61 VELLLRGSSR RLDLLHQQLQ ELHAHV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.045757
Match:	1cxzB
Description:	Effector domain of the protein kinase pkn/prk1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits