YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|8569264
Organism:	Rattus norvegicus
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|8569264.

Description	E-value	Query Range	Subject Range
gi\|53127406, gi\|... - gi\|61098278\|ref\|NP_001012806.1\| epsin 2 [Gallus gallus], gi\|53127406\|emb\|CAG31086.1\| hypothetical pr...	213.0	[0..1]	[144..15]
gi\|193786024, gi... - gi\|62740066\|gb\|AAH93974.1\| Epsin 2 [Homo sapiens], gi\|62739890\|gb\|AAH93972.1\| Epsin 2 [Homo sapiens]...	212.0	[0..1]	[144..15]
gi\|73955990 - gi\|73955990\|ref\|XP_546652.2\| PREDICTED: similar to epsin 2 isoform a isoform 1 [Canis familiaris]	212.0	[0..1]	[144..15]
gi\|114668742, gi... - gi\|114668752\|ref\|XP_001154252.1\| PREDICTED: epsin 2 isoform 2 [Pan troglodytes], gi\|114668742\|ref\|XP...	212.0	[0..1]	[144..15]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HNYSEAEIKV REATSNDPWG PSSSLMSEIA DLTYNVVAFS EIMSMIWKRL NDHGKNWRHV  60
   61 YKAMTLMEYL IKTGSERVSQ QCKENMYAVQ TLKDFQYVDR DGKDQGVNVR EKAKQLVALL 120
  121 RDEDRLREER AHALKTKEKL AQTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	1eduA
Description:	Epsin 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.229007340928547	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: