YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7767167, gi\|7...
Organism:	Homo sapiens
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7767167, gi|7....

Description	E-value	Query Range	Subject Range
gi\|114595959 - gi\|114595959\|ref\|XP_526682.2\| PREDICTED: FAT tumor suppressor homolog 4 isoform 2 [Pan troglodytes]	168.0	[0..3]	[117..3864]
FAT4_MOUSE - Protocadherin Fat 4 OS=Mus musculus GN=Fat4 PE=1 SV=1	164.0	[0..3]	[117..3864]
gi\|109466541, gi... - gi\|109466541\|ref\|XP_001070073.1\| PREDICTED: similar to FAT tumor suppressor homolog 4 [Rattus norveg...	163.0	[0..3]	[117..3864]
gi\|73983942 - gi\|73983942\|ref\|XP_856760.1\| PREDICTED: similar to FAT tumor suppressor homolog 4 isoform 2 [Canis f...	161.0	[0..3]	[117..2459]
gi\|50746703 - gi\|50746703\|ref\|XP_420617.1\| PREDICTED: similar to fat-like cadherin FATJ protein [Gallus gallus]	161.0	[0..3]	[117..4455]
gi\|47227548 - gi\|47227548\|emb\|CAG04696.1\| unnamed protein product [Tetraodon nigroviridis]	141.0	[0..3]	[105..1420]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEPVDPCFRA NCEYQCQPLD QTSYLCVCAE GFAPIPHEPH RCQMFCNQTA CPADCDPNTQ  60
   61 ASCECPEGYI LDDGFICTDI DECENGGFCS GVCHNLPGTF ECICGPDSAL AGQIGTDC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.522879
Match:	1dx5I
Description:	Thrombomodulin, different EGF-like domains
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits