YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7766913, gi\|7...
Organism:	Homo sapiens
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7766913, gi|7....

Description	E-value	Query Range	Subject Range
gi\|71675440, gi\|... - gi\|71675440\|ref\|ZP_00673185.1\| TPR repeat:Sel1-like repeat [Trichodesmium erythraeum IMS101], gi\|716...	145.0	[0..2]	[118..1161]
gi\|72397563, gi\|... - gi\|73670401\|ref\|YP_306416.1\| hypothetical protein Mbar_A2941 [Methanosarcina barkeri str. Fusaro], g...	142.0	[0..3]	[116..426]
gi\|40063048 - gi\|40063048\|gb\|AAR37904.1\| TPR domain protein [uncultured marine bacterium 560]	140.0	[0..2]	[117..141]
gi\|71894775, gi\|... - gi\|71894775\|ref\|NP_001026589.1\| small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta...	138.0	[0..1]	[118..82]
gi\|33348820 - gi\|33348820\|gb\|AAQ16110.1\| small glutamine-rich tetratricopeptide [Schistosoma japonicum]	137.0	[0..4]	[118..83]
SGTB - small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	136.0	[0..3]	[118..84]
gi\|114600030 - gi\|114600030\|ref\|XP_526906.2\| PREDICTED: small glutamine-rich tetratricopeptide repeat (TPR)-contain...	136.0	[0..3]	[118..84]
gi\|46119251, gi\|... - gi\|67923685\|ref\|ZP_00517153.1\| TPR repeat:TPR repeat [Crocosphaera watsonii WH 8501], gi\|67854485\|gb...	136.0	[0..2]	[116..376]
PPP5_SOLLC - Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1	136.0	[0..4]	[117..14]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQVNELKEK GNKALSVGNI DDALQCYSEA IKLDPHNHVL YSNRSAAYAK KGDYQKAYED  60
   61 GCKTVDLKPD WGKGYSRKAA ALEFLNRFEE AKRTYEEGLK HEANNPQLKE GLQNMEAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.39794
Match:	1elwA
Description:	Hop
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.02652482814057	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: