YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7766910
Organism:	Homo sapiens
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7766910.

Description	E-value	Query Range	Subject Range
gi\|71894775, gi\|... - gi\|71894775\|ref\|NP_001026589.1\| small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta...	136.0	[0..2]	[128..83]
SGTB - small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	135.0	[0..3]	[127..84]
gi\|114600030 - gi\|114600030\|ref\|XP_526906.2\| PREDICTED: small glutamine-rich tetratricopeptide repeat (TPR)-contain...	135.0	[0..3]	[127..84]
gi\|72397563, gi\|... - gi\|73670401\|ref\|YP_306416.1\| hypothetical protein Mbar_A2941 [Methanosarcina barkeri str. Fusaro], g...	135.0	[0..2]	[129..391]
gi\|109122872 - gi\|109122872\|ref\|XP_001117755.1\| PREDICTED: similar to small glutamine-rich tetratricopeptide [Macac...	134.0	[0..3]	[127..159]
gi\|57042869 - gi\|57042869\|ref\|XP_535258.1\| PREDICTED: similar to small glutamine-rich tetratricopeptide repeat (TP...	134.0	[0..3]	[127..84]
SGTB_RAT - Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb P...	133.0	[0..3]	[127..84]
gi\|147900127, gi... - gi\|49257856\|gb\|AAH74276.1\| MGC84046 protein [Xenopus laevis], gi\|147900127\|ref\|NP_001086162.1\| MGC84...	132.0	[0..1]	[127..86]
gi\|71675440, gi\|... - gi\|71675440\|ref\|ZP_00673185.1\| TPR repeat:Sel1-like repeat [Trichodesmium erythraeum IMS101], gi\|716...	132.0	[0..4]	[129..1163]
SGTB_MOUSE - Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus GN=Sgtb PE=1 S...	132.0	[0..3]	[127..84]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKQALKEKEL GNDAYKKKDF DTALKHYDKA KELDPTNMTY ITNQAAVYFE KGDYNKCREL  60
   61 CEKAIEVGRE NREDYRQIAK AYARIGNSYF KEEKYKDAIH FYNKSLAEHR TPDVLKKCQQ 120
  121 AEKILKEQER L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	1elrA
Description:	Hop
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.02652482814057	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: