YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7546567
Organism:	Homo sapiens
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7546567.

Description	E-value	Query Range	Subject Range
gi\|91971, gi\|149... - pir\|\|S00550 Alzheimer's disease amyloid beta protein precursor - rat, gi\|149059744\|gb\|EDM10627.1\| am... gi\|55617 - gi\|55617\|emb\|CAA30488.1\| unnamed protein product [Rattus rattus]	209.0	[0..1]	[96..28]
gi\|1805299 - gi\|1805299\|gb\|AAB41502.1\| hippocampal amyloid precursor protein [Mus musculus]	209.0	[0..1]	[96..28]
A4_RAT - Amyloid beta A4 protein OS=Rattus norvegicus GN=App PE=1 SV=2	208.0	[0..1]	[96..28]
gi\|82542243 - gi\|82542243\|gb\|ABB82033.1\| amyloid precursor protein variant 1 [Sus scrofa]	207.0	[0..1]	[96..28]
gi\|9837545 - gi\|9837545\|gb\|AAG00593.1\|AF289218_1 beta-amyloid precursor protein 695 isoform [Gallus gallus]	207.0	[0..1]	[96..28]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLAEPQIAMF CGRLNMHMNV QNGKWDSDPS GTKTCIDTKE GILQYCQEVY PELQITNVVE  60
   61 ANQPVTIQNW CKRGRKQCKT HPHFVIPYRC LVGEFV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.154902
Match:	1mwpA
Description:	N-terminal domain of the amyloid precursor protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits