YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7546432, gi\|7...
Organism:	Homo sapiens
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7546432, gi|7....

Description	E-value	Query Range	Subject Range
gi\|112180597 - gi\|112180597\|gb\|AAH62947.2\| Target of myb1-like 2 (chicken) [Mus musculus]	237.0	[0..5]	[157..1]
gi\|62656166, gi\|... - gi\|62656166\|ref\|XP_340811.2\| PREDICTED: similar to target of myb1-like 2 isoform 2 [Rattus norvegicu...	236.0	[0..5]	[157..1]
TM1L2_XENLA - TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1	235.0	[0..5]	[157..1]

Back

Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAMGSDFLLG NPFSSPVGQR IEKATDGSLQ SEDWALNMEI CDIINETEEG PKDALRAVKK  60
   61 RIVGNKNFHE VMLALTVLET CVKNCGHRFH VLVASQDFVE SVLVRTILPK NNPPTIVHDK 120
  121 VLNLIQSWAD AFRSSPDLTG VVTIYEDLRR KGLEFPM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.154902
Match:	1elkA
Description:	Tom1 protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.229007340928547	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: