YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6730262
Organism:	Homo sapiens
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6730262.

Description	E-value	Query Range	Subject Range
FA8_CANLF - Coagulation factor VIII OS=Canis lupus familiaris GN=F8 PE=2 SV=1	210.0	[0..2]	[159..2183]
gi\|224258 - gi\|224258\|prf\|\|1012298A factor VIIIC	210.0	[0..1]	[159..2190]
FA5V_PSETE - Venom prothrombin activator pseutarin-C non-catalytic subunit OS=Pseudonaja textilis PE=1 SV=1	205.0	[0..1]	[158..1300]
FA5V_OXYSU - Venom prothrombin activator oscutarin-C non-catalytic subunit OS=Oxyuranus scutellatus PE=1 SV=1	204.0	[0..1]	[158..1299]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNSCSMPLGM ESKAISDAQI TASSYFTNMF ATWSPSKARL HLQGRSNAWR PQVNNPKEWL  60
   61 QVDFQKTMKV TGVTTQGVKS LLTSMYVKEF LISSSQDGHQ WTLFFQNGKV KVFQGNQDSF 120
  121 TPVVNCLDPP LLTRYLRIHP QSWVHQIALR MEVLGCEAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.0
Match:	1d7pM
Description:	C2 domain of factor VIII
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits