YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6730228, gi\|6...
Organism:	Homo sapiens
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6730228, gi|6....

Description	E-value	Query Range	Subject Range
gi\|112305, gi\|206694 - gi\|206694\|gb\|AAA42059.1\| snRNP-associated polypeptide N, pir\|\|A35448 small nuclear ribonucleoprotein...	124.0	[0..1]	[91..1]
gi\|86438323 - gi\|86438323\|gb\|AAI12635.1\| SNRPB protein [Bos taurus]	123.0	[0..1]	[91..1]
gi\|50540540, gi\|... - gi\|8099650\|gb\|AAF72188.1\| snRNP-associated protein; SmB [Danio rerio], gi\|50540540\|ref\|NP_991230.1\| ...	122.0	[0..1]	[91..1]
RSMN_MOUSE - Small nuclear ribonucleoprotein-associated protein N OS=Mus musculus GN=Snrpn PE=2 SV=1 gi\|386203 - gi\|386203\|gb\|AAB27138.1\| SmN [Mus sp.] gi\|109080390, gi... - gi\|109080390\|ref\|XP_001108068.1\| PREDICTED: similar to small nuclear ribonucleoparticle-associated p... RSMN_MACFA - Small nuclear ribonucleoprotein-associated protein N OS=Macaca fascicularis GN=SNRPN PE=2 SV=1 RSMN_PONPY - Small nuclear ribonucleoprotein-associated protein N - Pongo pygmaeus (Orangutan) SNRPN - small nuclear ribonucleoprotein polypeptide N RSMN_RAT - Small nuclear ribonucleoprotein-associated protein N OS=Rattus norvegicus GN=Snrpn PE=2 SV=1 RSMN_PONAB - Small nuclear ribonucleoprotein-associated protein N OS=Pongo abelii GN=SNRPN PE=2 SV=1 gi\|123987597, gi... - gi\|123999102\|gb\|ABM87134.1\| small nuclear ribonucleoprotein polypeptide N [synthetic construct], gi\|...	122.0	[0..1]	[91..1]
gi\|114656016 - gi\|114656016\|ref\|XP_523182.2\| PREDICTED: hypothetical protein [Pan troglodytes]	122.0	[0..1]	[91..38]
gi\|3142634 - gi\|3142634\|gb\|AAC78612.1\| small nuclear ribonucleoprotein N [Mus musculus]	122.0	[0..1]	[91..1]
gi\|57045593, gi\|... - gi\|73950980\|ref\|XP_848476.1\| PREDICTED: similar to small nuclear ribonucleoparticle-associated prote... gi\|149691049 - gi\|149691049\|ref\|XP_001492752.1\| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide N...	122.0	[0..1]	[91..1]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVGKSSKML QHIDYRMRCI LQDGRIFIGT FKAFDKHMNL ILCDCDEFRK IKPKNSKQAE  60
   61 REEKRVLGLV LLRGENLVSM TVEGPPPKDT G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.045757
Match:	1d3bB
Description:	B core SNRNP protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits