YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6730229, gi\|6...
Organism:	Homo sapiens
Length:	75 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6730229, gi|6....

Description	E-value	Query Range	Subject Range
gi\|50728518 - gi\|50728518\|ref\|XP_416157.1\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	101.0	[0..1]	[72..205]
gi\|73978207 - gi\|73978207\|ref\|XP_539726.2\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	101.0	[0..1]	[72..195]
gi\|94388852 - gi\|94388852\|ref\|XP_919276.2\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	101.0	[0..1]	[72..152]
gi\|109123961 - gi\|109123961\|ref\|XP_001115319.1\| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm4 (Gly...	100.0	[0..3]	[75..123]
gi\|33876795 - gi\|33876795\|gb\|AAH02505.2\| SNRPF protein [Homo sapiens]	99.0	[0..1]	[72..46]
gi\|116058235 - gi\|116058235\|emb\|CAL53424.1\| glycine rich protein-common tobacco sp\|Q43582\|LSM4_TOBAC Probable U6 sn...	98.0	[0..3]	[75..658]
gi\|110758613 - gi\|110758613\|ref\|XP_001120143.1\| PREDICTED: similar to small nuclear ribonucleoprotein D3 [Apis mell...	98.0	[0..1]	[75..1]
gi\|74353864 - gi\|74353864\|gb\|AAI02193.1\| SNRPF protein [Bos taurus]	98.0	[0..1]	[72..34]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIGVPIKVL HEAEGHIVTC ETNTGEVYRG KLIEAEDNMN CQMSNITVTY RDGRVAQLEQ  60
   61 VYIRGCKIRF LILPD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.045757
Match:	1d3bA
Description:	D3 core SNRNP protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits