YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157833455, gi...
Organism:	Escherichia coli
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157833455, gi....

Description	E-value	Query Range	Subject Range
gi\|66360304, gi\|... - gi\|66360304\|pdb\|1VRC\|B Chain B, Complex Of Enzyme Iiamannose And The Histidine-Containing Phosphocar...	158.0	[0..1]	[135..2]
gi\|197261643, gi... - gi\|197261643\|ref\|ZP_03161717.1\| PTS system, mannose-specific IIAB component [Salmonella enterica sub... lcl\|NC_016856.1_... - [gene=manX] [protein=mannose-specific enzyme IIAB] [protein_id=YP_005237771.1] [location=1939938..19... gi\|197093654, gi... - gi\|197362177\|ref\|YP_002141814.1\| PTS system, mannose-specific IIAB component [Salmonella enterica su... gi\|194405321, gi... - gi\|194446658\|ref\|YP_002041086.1\| PTS system, mannose-specific IIAB component [Salmonella enterica su... gi\|194448000, gi... - gi\|194448000\|ref\|YP_002045876.1\| PTS system, mannose-specific IIAB component [Salmonella enterica su... gi\|16420362, gi\|... - gi\|16765171\|ref\|NP_460786.1\| mannose-specific enzyme IIAB [Salmonella typhimurium LT2], gi\|16420362\|... gi\|168241424, gi... - gi\|205339563\|gb\|EDZ26327.1\| PTS system, mannose-specific IIAB component [Salmonella enterica subsp. ... gi\|205350893, gi... - gi\|205350893\|gb\|EDZ37524.1\| PTS system, mannose-specific IIAB component [Salmonella enterica subsp. ... gi\|167553488, gi... - gi\|205322074\|gb\|EDZ09913.1\| PTS system, mannose-specific IIAB component [Salmonella enterica subsp. ... gi\|224583679, gi... - gi\|224583679\|ref\|YP_002637477.1\| PTS system, mannose-specific IIAB component [Salmonella enterica su... gi\|56413251, gi\|... - gi\|56413251\|ref\|YP_150326.1\| PTS system, mannose-specific IIAB component [Salmonella enterica subsp....	157.0	[0..1]	[133..2]
gi\|207856664, gi... - gi\|207856664\|ref\|YP_002243315.1\| PTS system, mannose-specific IIAB component [Salmonella enterica su... gi\|213162951 - gi\|213162951\|ref\|ZP_03348661.1\| PTS system, mannose-specific IIAB component [Salmonella enterica sub... gi\|213426597 - gi\|213426597\|ref\|ZP_03359347.1\| PTS system, mannose-specific IIAB component [Salmonella enterica sub... gi\|213610065 - gi\|213610065\|ref\|ZP_03369891.1\| PTS system, mannose-specific IIAB component [Salmonella enterica sub... gi\|198243985, gi... - gi\|198243985\|ref\|YP_002215310.1\| PTS system, mannose-specific IIAB component [Salmonella enterica su... gi\|199603141, gi... - gi\|200390696\|ref\|ZP_03217307.1\| PTS system, mannose-specific IIAB component [Salmonella enterica sub... gi\|238912106 - gi\|238912106\|ref\|ZP_04655943.1\| PTS system, mannose-specific IIAB component [Salmonella enterica sub... gi\|204931330, gi... - gi\|204931330\|ref\|ZP_03222058.1\| PTS system, mannose-specific IIAB component [Salmonella enterica sub... gi\|205352505, gi... - gi\|205352505\|ref\|YP_002226306.1\| PTS system, mannose-specific IIAB component [Salmonella enterica su... gi\|16760719 - gi\|16760719\|ref\|NP_456336.1\| PTS system, mannose-specific IIAB component [Salmonella enterica subsp.... gi\|168820581, gi... - gi\|205342718\|gb\|EDZ29482.1\| PTS system, mannose-specific IIAB component [Salmonella enterica subsp. ... gi\|194471372, gi... - gi\|194471372\|ref\|ZP_03077356.1\| PTS system, mannose-specific IIAB component [Salmonella enterica sub... gi\|25287844, gi\|... - gi\|25287844\|pir\|\|AF0726 protein-Npi-phosphohistidine-sugar phosphotransferase (EC 2.7.1.69) - Salmon... gi\|194713776, gi... - gi\|194738274\|ref\|YP_002114864.1\| PTS system, mannose-specific IIAB component [Salmonella enterica su... gi\|29141523, gi\|... - gi\|29141523\|ref\|NP_804865.1\| mannose-specific IIAB component of PTS system [Salmonella enterica subs... gi\|197212619, gi... - gi\|197248916\|ref\|YP_002146194.1\| PTS system, mannose-specific IIAB component [Salmonella enterica su... gi\|205331755, gi... - gi\|205331755\|gb\|EDZ18519.1\| PTS system, mannose-specific IIAB component [Salmonella enterica subsp. ... gi\|197289307, gi... - gi\|197289307\|gb\|EDY28674.1\| PTS system, mannose-specific IIAB component [Salmonella enterica subsp. ... gi\|195634497, gi... - gi\|195634497\|gb\|EDX52849.1\| PTS system, mannose-specific IIAB component [Salmonella enterica subsp. ... gi\|213649917 - gi\|213649917\|ref\|ZP_03379970.1\| PTS system, mannose-specific IIAB component [Salmonella enterica sub... gi\|213853089 - gi\|213853089\|ref\|ZP_03382621.1\| PTS system, mannose-specific IIAB component [Salmonella enterica sub... gi\|213976258 - gi\|213976258\|ref\|ZP_03403517.1\| PTS system, mannose-specific IIAB component [Salmonella enterica sub... gi\|214001090 - gi\|214001090\|ref\|ZP_03411825.1\| PTS system, mannose-specific IIAB component [Salmonella enterica sub...	157.0	[0..1]	[133..2]
gi\|75241314, gi\|... - gi\|75241314\|ref\|ZP_00725165.1\| COG3444: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|110641934, gi... - gi\|110641934\|ref\|YP_669664.1\| PTS system, mannose-specific IIAB component [Escherichia coli 536], gi...	157.0	[0..1]	[133..2]
gi\|62180394, gi\|... - gi\|62180394\|ref\|YP_216811.1\| sugar specific PTS family mannose-specific enzyme IIAB [Salmonella ente...	157.0	[0..1]	[133..2]
gi\|110614938, gi... - gi\|110805390\|ref\|YP_688910.1\| PTS enzyme IIAB [Shigella flexneri 5 str. 8401], gi\|110614938\|gb\|ABF03... EG10567 - fused mannose-specific PTS enzymes: IIA component /IIB component / Mannose permease, EIIAB component;... gi\|30041178, gi\|... - gi\|30062929\|ref\|NP_837100.1\| PTS enzyme IIAB [Shigella flexneri 2a str. 2457T], gi\|30041178\|gb\|AAP16... gi\|74311870, gi\|... - gi\|74311870\|ref\|YP_310289.1\| PTS enzyme IIAB, mannose-specific [Shigella sonnei Ss046], gi\|73855347\|... PTNAB_ECO57 - PTS system mannose-specific EIIAB component OS=Escherichia coli O157:H7 GN=manX PE=3 SV=2 PTNAB_ECOL6 - PTS system mannose-specific EIIAB component OS=Escherichia coli O6 GN=manX PE=3 SV=2 EG10567 - fused mannose-specific PTS enzymes: IIA component /IIB component / Mannose permease, EIIAB component;... gi\|75255556, gi\|... - gi\|75255556\|ref\|ZP_00727343.1\| COG3444: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|188492671, gi... - gi\|75513686\|ref\|ZP_00736062.1\| COG3444: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|168749349, gi... - gi\|188016260\|gb\|EDU54382.1\| PTS system, mannose-specific IIAB component [Escherichia coli O157:H7 st... gi\|82543739, gi\|... - gi\|82543739\|ref\|YP_407686.1\| PTS enzyme IIAB, mannose-specific [Shigella boydii Sb227], gi\|81245150\|... gi\|168758132, gi... - gi\|189355011\|gb\|EDU73430.1\| PTS system, mannose-specific IIAB component [Escherichia coli O157:H7 st... gi\|189365715, gi... - gi\|189365715\|gb\|EDU84131.1\| PTS system, mannose-specific IIAB component [Escherichia coli O157:H7 st... gi\|254592840, gi... - gi\|254793440\|ref\|YP_003078277.1\| mannose-specific PTS enzyme [Escherichia coli O157:H7 str. TW14359]... gi\|187731326, gi... - gi\|75177250\|ref\|ZP_00697339.1\| COG3444: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|254161876, gi... - gi\|254161876\|ref\|YP_003044984.1\| fused mannose-specific PTS enzymes: IIA component/IIB component [Es... gi\|157080889, gi... - gi\|75190848\|ref\|ZP_00704115.1\| COG3444: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|253773229, gi... - gi\|254288664\|ref\|YP_003054412.1\| fused mannose-specific PTS enzymes: IIA component/IIB component [Es... gi\|242377537, gi... - gi\|251785264\|ref\|YP_002999568.1\| hypothetical protein B21_01775 [Escherichia coli BL21], gi\|24237753... gi\|194439634, gi... - gi\|83585002\|ref\|ZP_00923657.1\| COG3444: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|238861210, gi... - gi\|238901031\|ref\|YP_002926827.1\| fused mannose-specific PTS enzymes: IIA component/IIB component [Es... gi\|75215178, gi\|... - gi\|75215178\|ref\|ZP_00713623.1\| COG3444: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|227837330, gi... - gi\|227885757\|ref\|ZP_04003562.1\| protein-N(pi)-phosphohistidine--sugar phosphotransferase [Escherichi... gi\|190901121, gi... - gi\|75227921\|ref\|ZP_00714621.1\| COG3444: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|75195884, gi\|... - gi\|75195884\|ref\|ZP_00705954.1\| COG3444: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|194430019, gi... - gi\|75208750\|ref\|ZP_00709042.1\| COG3444: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|208731111, gi... - gi\|208816768\|ref\|ZP_03257888.1\| PTS system, mannose-specific IIAB component [Escherichia coli O157:H... gi\|208741139, gi... - gi\|208821016\|ref\|ZP_03261336.1\| PTS system, mannose-specific IIAB component [Escherichia coli O157:H... gi\|209160968, gi... - gi\|209399568\|ref\|YP_002270896.1\| PTS system, mannose-specific IIAB component [Escherichia coli O157:... gi\|209912441, gi... - gi\|209919182\|ref\|YP_002293266.1\| PTS system mannose-specific IIAB components [Escherichia coli SE11]... gi\|217317966, gi... - gi\|217328619\|ref\|ZP_03444700.1\| PTS system, mannose-specific IIAB component [Escherichia coli O157:H... gi\|218361157, gi... - gi\|218554389\|ref\|YP_002387302.1\| fused mannose-specific PTS enzymes: IIA component ; IIB component [... gi\|218352111, gi... - gi\|218695379\|ref\|YP_002403046.1\| fused mannose-specific PTS enzymes: IIA component ; IIB component [... gi\|218432412, gi... - gi\|218705315\|ref\|YP_002412834.1\| fused mannose-specific PTS enzymes: IIA component ; IIB component [... gi\|168770795, gi... - gi\|189360337\|gb\|EDU78756.1\| PTS system, mannose-specific IIAB component [Escherichia coli O157:H7 st... gi\|168774864, gi... - gi\|187769489\|gb\|EDU33333.1\| PTS system, mannose-specific IIAB component [Escherichia coli O157:H7 st... gi\|1736455, gi\|8... - gi\|89108656\|ref\|AP_002436.1\| fused mannose-specific PTS enzyme IIAB components [Escherichia coli str... gi\|189000300, gi... - gi\|189000300\|gb\|EDU69286.1\| PTS system, mannose-specific IIAB component [Escherichia coli O157:H7 st... gi\|13361994, gi\|... - gi\|15831781\|ref\|NP_310554.1\| PTS system, mannose-specific IIAB component [Escherichia coli O157:H7 s... gi\|189371916, gi... - gi\|189371916\|gb\|EDU90332.1\| PTS system, mannose-specific IIAB component [Escherichia coli O157:H7 st... PTNAB_SHIFL - PTS system mannose-specific EIIAB component OS=Shigella flexneri GN=manX PE=3 SV=2 gi\|170081472, gi... - gi\|170081472\|ref\|YP_001730792.1\| fused mannose-specific PTS enzymes: IIA component; IIB component [E... PTNAB_ECOLI - PTS system mannose-specific EIIAB component (EIIAB-Man) [Includes: Mannose-specific phosphotransfera... gi\|170517999, gi... - gi\|170680281\|ref\|YP_001743429.1\| PTS system, mannose-specific IIAB component [Escherichia coli SMS-3... gi\|24112795, gi\|... - gi\|24112795\|ref\|NP_707305.1\| PTS enzyme IIAB [Shigella flexneri 2a str. 301], gi\|24051725\|gb\|AAN4301... gi\|195940311 - gi\|195940311\|ref\|ZP_03085693.1\| fused mannose-specific PTS enzymes: IIA component; IIB component [Es... PTNAB_ECOL6 - PTS system mannose-specific EIIAB component OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 /... gi\|208725186, gi... - gi\|208810670\|ref\|ZP_03252546.1\| PTS system, mannose-specific IIAB component [Escherichia coli O157:H...	157.0	[0..1]	[133..2]
gi\|218365448, gi... - gi\|218558679\|ref\|YP_002391592.1\| fused mannose-specific PTS enzymes: IIA component ; IIB component [... gi\|115513100, gi... - gi\|117623976\|ref\|YP_852889.1\| PTS system, mannose-specific IIAB component [Escherichia coli APEC O1]... gi\|237705767, gi... - gi\|237705767\|ref\|ZP_04536248.1\| PTS system [Escherichia sp. 3_2_53FAA], gi\|226900524\|gb\|EEH86783.1\| ... gi\|91072609, gi\|... - gi\|91211035\|ref\|YP_541021.1\| PTS system, mannose-specific IIAB component [Escherichia coli UTI89], g...	157.0	[0..1]	[133..2]
gi\|110800606, gi... - gi\|110800606\|ref\|YP_695269.1\| PTS system mannose/fructose/sorbose family IIB subunit [Clostridium pe... gi\|170712668, gi... - gi\|170712668\|gb\|EDT24850.1\| PTS system, mannose/fructose/sorbose family, IIB component [Clostridium ... gi\|177909134, gi... - gi\|182625582\|ref\|ZP_02953352.1\| PTS system, mannose/fructose/sorbose family, IIB component [Clostrid...	156.0	[0..2]	[133..2]
gi\|168212543, gi... - gi\|170716130\|gb\|EDT28312.1\| PTS system, mannose/fructose/sorbose family, IIB component [Clostridium ... gi\|168216303, gi... - gi\|182381729\|gb\|EDT79208.1\| PTS system, mannose/fructose/sorbose family, IIB component [Clostridium ... gi\|169299356, gi... - gi\|169342584\|ref\|ZP_02863636.1\| PTS system, mannose/fructose/sorbose family, IIB component [Clostrid... gi\|168208105, gi... - gi\|170660607\|gb\|EDT13290.1\| PTS system, mannose/fructose/sorbose family, IIB component [Clostridium ... gi\|18309803, gi\|... - gi\|18309803\|ref\|NP_561737.1\| PTS system [Clostridium perfringens str. 13], gi\|18144481\|dbj\|BAB80527....	156.0	[0..2]	[133..2]
gi\|81241354, gi\|... - gi\|82777206\|ref\|YP_403555.1\| PTS enzyme IIAB, mannose-specific [Shigella dysenteriae Sd197], gi\|8124...	155.0	[0..1]	[133..2]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIAIVIGTHG WAAEQLLKTA EMLLGEQENV GWIDFVPGEN AETLIEKYNA QLAKLDTTKG  60
   61 VLFLVDTWGG SPFNAASRIV VDKEHYEVIA GVNIPMLVET LMARDDDPSF DELVALAVET 120
  121 GREGVKALKA KPFAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	1pdoA
Description:	PHOSPHOENOLPYRUVATE-DEPENDENT PHOSPHOTRANSFERASE SYSTEM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	2.88637330154375	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	1.96301338707837	bayes_pls_golite062009
binding	0.63165281523733	bayes_pls_golite062009
transporter activity	0.138487494995815	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: