YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6729724, gi\|4...
Organism:	Geobacillus stearothermophilus
Length:	433 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6729724, gi|4....

Description	E-value	Query Range	Subject Range
gi\|56380689, gi\|... - gi\|56420847\|ref\|YP_148165.1\| pyrimidine-nucleoside phosphorylase (PYNP) [Geobacillus kaustophilus HT...	467.0	[0..1]	[433..1]
gi\|15024496, gi\|... - gi\|15894824\|ref\|NP_348173.1\| pyrimidine-nucleoside phosphorylase [Clostridium acetobutylicum ATCC 82... gi\|25286848 - pir\|\|F97090 pyrimidine-nucleoside phosphorylase [imported] - Clostridium acetobutylicum	466.0	[0..1]	[432..1]
PDP_GEOSE - Pyrimidine-nucleoside phosphorylase OS=Geobacillus stearothermophilus GN=pdp PE=1 SV=1	462.0	[0..1]	[432..1]
gi\|25286842 - pir\|\|E83841 pyrimidine-nucleoside phosphorylase pdp [imported] - Bacillus halodurans (strain C-125) gi\|10174150, gi\|... - gi\|15614096\|ref\|NP_242399.1\| pyrimidine-nucleoside phosphorylase [Bacillus halodurans C-125], gi\|101...	461.0	[0..1]	[432..1]
gi\|219992851, gi... - gi\|89210651\|ref\|ZP_01189038.1\| Glycosyl transferase, family 3 [Halothermothrix orenii H 168], gi\|891...	457.0	[0..1]	[432..1]
PDP_STAHJ - Pyrimidine-nucleoside phosphorylase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=pdp PE=3 SV=...	455.0	[0..1]	[432..1]
gi\|73662057, gi\|... - gi\|73662057\|ref\|YP_300838.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus saprophyticus subsp...	454.0	[0..1]	[432..1]
gi\|21283789, gi\|... - gi\|21283789\|ref\|NP_646877.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. aureu... gi\|251812293, gi... - gi\|251812293\|ref\|ZP_04826766.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. au...	454.0	[0..1]	[433..14]
gi\|14247909, gi\|... - gi\|15925126\|ref\|NP_372660.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. aureu... gi\|13701930, gi\|... - gi\|15927710\|ref\|NP_375243.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. aureu... gi\|253733030, gi... - gi\|253733030\|ref\|ZP_04867195.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. au... gi\|25286849 - pir\|\|E90007 pyrimidine nucleoside phosphorylase [imported] - Staphylococcus aureus (strain N315)	454.0	[0..1]	[432..14]
gi\|52143529, gi\|... - gi\|52143529\|ref\|YP_083300.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus E33L], gi\|51976998... gi\|42736967, gi\|... - gi\|42781046\|ref\|NP_978293.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus ATCC 10987], gi\|42... gi\|218896861, gi... - gi\|218896861\|ref\|YP_002445272.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus G9842], gi\|218... gi\|195993903, gi... - gi\|196033469\|ref\|ZP_03100881.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus W], gi\|19599390...	454.0	[0..1]	[432..1]

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Predicted Domain #1

Region A:
Residues: [1-433]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMVDLIAKK RDGKALTKEE IEWIVRGYTN GDIPDYQMSA LAMAIYFRGM TEEETAALTM  60
   61 AMVQSGEMLD LSSIRGVKVD KHSTGGVGDT TTLVLGPLVA SVGVPVAKMS GRGLGHTGGT 120
  121 IDKLESVPGF HVEISKDEFI RLVNENGIAI IGQTGDLTPA DKKLYALRDV TATVNSIPLI 180
  181 ASSIMSKKIA AGADAIVLDV KTGAGAFMKK LDEARRLARV MVDIGKRVGR RTMAVISDMS 240
  241 QPLGYAVGNA LEVKEAIETL KGNGPHDLTE LCLTLGSHMV YLAEKAPSLD EARRLLEEAI 300
  301 RSGAAIAAFK TFLAAQGGDA SVVDDLDKLP KAAYTSTVTA AADGYVAEMA ADDIGTAAMW 360
  361 LGAGRAKKED VIDLAVGIVL HKKIGDRVQK GEALATIHSN RPDVLDVKEK IEAAIRLSPQ 420
  421 PVARPPLIYE TIV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	133.0
Match:	1brwA
Description:	Pyrimidine nucleoside phosphorylase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits