YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|5822441
Organism:	Homo sapiens
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5822441.

Description	E-value	Query Range	Subject Range
gi\|119589290, gi... - gi\|19743806\|ref\|NP_598334.1\| roundabout 1 isoform b [Homo sapiens], gi\|119589291\|gb\|EAW68885.1\| roun...	114.0	[0..2]	[118..216]
gi\|66267492 - gi\|66267492\|gb\|AAH95604.1\| Fgfr4 protein [Danio rerio]	114.0	[0..2]	[118..250]
ROBO1_MOUSE - Roundabout homolog 1 OS=Mus musculus GN=Robo1 PE=1 SV=1	114.0	[0..2]	[118..216]
gi\|73953998 - gi\|73953998\|ref\|XP_546211.2\| PREDICTED: similar to Fibroblast growth factor receptor 4 precursor (FG...	113.0	[0..2]	[118..197]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VALTVYYPPR VVSLEEPELR LEHCIEFVVR GNPPPTLHWL HNGQPLRESK IIHVEYYQEG  60
   61 EISEGCLLFN KPTHYNNGNY TLIAKNPLGT ANQTINGHFL KEPFPVDEVS PTPPITVT

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Detection Method:	PSI-BLAST
Confidence:	22.154902
Match:	1wwcA
Description:	NT3 binding domain of trkC receptor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.483195558859675	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: