YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|5822440
Organism:	Homo sapiens
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5822440.

Description	E-value	Query Range	Subject Range
gi\|91079881 - gi\|91079881\|ref\|XP_967655.1\| PREDICTED: similar to CG32387-PB, isoform B [Tribolium castaneum]	113.0	[0..3]	[102..811]
gi\|157129964, gi... - gi\|157129964\|ref\|XP_001655492.1\| peroxidasin [Aedes aegypti], gi\|108884375\|gb\|EAT48600.1\| peroxidasi...	110.0	[0..1]	[102..188]
gi\|109498009 - gi\|109498009\|ref\|XP_222716.4\| PREDICTED: similar to hemicentin 1 [Rattus norvegicus]	109.0	[0..1]	[103..1166]
gi\|212238 - gi\|212238\|gb\|AAB53767.1\| myosin light chain kinase [Gallus gallus]	108.0	[0..2]	[97..97]
gi\|21707688 - gi\|21707688\|gb\|AAH34209.1\| Mylk protein [Mus musculus]	108.0	[0..2]	[97..237]
gi\|194664084, gi... - gi\|76609108\|ref\|XP_590786.2\| PREDICTED: similar to Myosin light chain kinase, smooth muscle and non-...	108.0	[0..2]	[97..303]
gi\|39963599 - gi\|39963599\|gb\|AAH64420.1\| MYLK protein [Homo sapiens]	108.0	[0..2]	[97..124]
gi\|1587068 - gi\|1587068\|prf\|\|2205337A myosin light chain kinase	108.0	[0..2]	[97..325]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHFAPTITFL ESPTSDHHWC IPFTVKGNPK PALQWFYNGA ILNESKYICT KIHVTNHTEY  60
   61 HGCLQLDNPT HMNNGDYTLI AKNEYGKDEK QISAHFMGWP GID

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	1wwbX
Description:	Ligand binding domain of trkB receptor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.483195558859675	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: