YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157829621, gi...
Organism:	Mus musculus
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157829621, gi....

Description	E-value	Query Range	Subject Range
gi\|31543653, gi\|... - gi\|31543653\|ref\|NP_003125.2\| signal recognition particle 14kDa (homologous Alu RNA binding protein) ...	158.0	[0..20]	[120..1]
gi\|55727961 - gi\|55727961\|emb\|CAH90733.1\| hypothetical protein [Pongo abelii] SRP14_PONAB - Signal recognition particle 14 kDa protein OS=Pongo abelii GN=SRP14 PE=2 SV=1 SRP14 - signal recognition particle 14kDa (homologous Alu RNA binding protein) gi\|114656316, gi... - gi\|114656316\|ref\|XP_001140418.1\| PREDICTED: hypothetical protein LOC737573 isoform 2 [Pan troglodyte...	158.0	[0..20]	[120..1]
gi\|62857637, gi\|... - gi\|62857637\|ref\|NP_001016786.1\| signal recognition particle 9 [Xenopus (Silurana) tropicalis], gi\|13...	158.0	[0..147]	[232..1]
SRP14_MACFA - Signal recognition particle 14 kDa protein OS=Macaca fascicularis GN=SRP14 PE=2 SV=1 gi\|109080612 - gi\|109080612\|ref\|XP_001093160.1\| PREDICTED: similar to signal recognition particle 14kDa (homologous...	158.0	[0..20]	[121..1]
gi\|53136754, gi\|... - gi\|53136754\|emb\|CAG32706.1\| hypothetical protein [Gallus gallus], gi\|147903950\|ref\|NP_001091005.1\| s...	157.0	[0..147]	[232..1]
gi\|109499186, gi... - gi\|186910265\|ref\|NP_001119567.1\| signal recognition particle 9 [Rattus norvegicus], gi\|149040908\|gb\|...	157.0	[0..147]	[232..1]
gi\|50603659, gi\|... - gi\|50603659\|gb\|AAH77407.1\| MGC81742 protein [Xenopus laevis], gi\|148234312\|ref\|NP_001086760.1\| MGC81...	157.0	[0..147]	[232..1]
SRP09_MOUSE - Signal recognition particle 9 kDa protein OS=Mus musculus GN=Srp9 PE=1 SV=2	156.0	[0..147]	[232..1]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASMTGGQQM GRIPGNSPRM VLLESEQFLT ELTRLFQKCR SSGSVFITLK KYDGRTKPIP  60
   61 RKSSVEGLEP AENKCLLRAT DGKRKISTVV SSKEVNKFQM AYSNLLRANM DGLKKRDKKN 120
  121 KSKKSKPAQG GEQKLISEED DSAGSPMPQF QTWEEFSRAA EKLYLADPMK VRVVLKYRHV 180
  181 DGNLCIKVTD DLVCLVYRTD QAQDVKKIEK FHSQLMRLMV AKESRNVTME TE

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Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	1914A
Description:	SIGNAL RECOGNITION PARTICLE ALU RNA BINDING HETERODIMER, SRP9/14
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits