YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|5107533, gi\|1...
Organism:	Homo sapiens
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5107533, gi|1....

Description	E-value	Query Range	Subject Range
gi\|73998946 - gi\|73998946\|ref\|XP_544052.2\| PREDICTED: similar to deleted in malignant brain tumors 1 isoform a pre...	195.0	[0..8]	[117..29]
DMBT1_PIG - Deleted in malignant brain tumors 1 protein OS=Sus scrofa GN=DMBT1 PE=2 SV=1	193.0	[0..7]	[116..229]
gi\|50809777 - gi\|50809777\|ref\|XP_429042.1\| PREDICTED: similar to deleted in malignant brain tumors 1 isoform c pre...	190.0	[0..2]	[112..225]
gi\|76669982 - gi\|76669982\|ref\|XP_581928.2\| PREDICTED: similar to CD163 antigen isoform a [Bos taurus]	190.0	[0..1]	[112..374]
gi\|43429892 - gi\|43429892\|gb\|AAS46613.1\| pancrin [Rattus norvegicus]	189.0	[0..8]	[118..68]
gi\|14041146 - gi\|14041146\|emb\|CAC38754.1\| multiadhesive protein [Geodia cydonium]	188.0	[0..9]	[116..341]
gi\|7209584 - gi\|7209584\|dbj\|BAA92266.1\| vomeroglandin [Mus musculus]	187.0	[0..8]	[118..333]

Back

Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APLAVNDGDM RLADGGATNQ GRVEIFYRGQ WGTVCDNLWD LTDASVVCRA LGFENATQAL  60
   61 GRAAFGQGSG PIMLDEVQCT GTEASLADCK SLGWLKSNCR HERDAGVVCT NETRSTHTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.69897
Match:	1by2A
Description:	STRUCTURE OF M2BP SCAVENGER RECEPTOR CYSTEINE-RICH DOMAIN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits