YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3660036
Organism:	Homo sapiens
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3660036.

Description	E-value	Query Range	Subject Range
gi\|2119258, gi\|4... - gi\|440900\|gb\|AAB28600.1\| beta-spectrin [Mus sp.], gi\|2119258\|pir\|\|I52577 beta-spectrin - mouse SPTB1_MOUSE - Spectrin beta chain, erythrocytic OS=Mus musculus GN=Sptb PE=1 SV=4	168.0	[0..1]	[109..172]
gi\|76658092 - gi\|76658092\|ref\|XP_582660.2\| PREDICTED: similar to Spectrin beta chain, brain 2 (Spectrin, non-eryth...	166.0	[0..1]	[109..325]
gi\|114653510 - gi\|114653510\|ref\|XP_001170755.1\| PREDICTED: spectrin beta isoform 2 [Pan troglodytes]	166.0	[0..2]	[109..173]
gi\|73963253 - gi\|73963253\|ref\|XP_866376.1\| PREDICTED: similar to spectrin beta isoform a isoform 10 [Canis familia...	166.0	[0..2]	[109..173]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKSAKDALLL WCQMKTAGYP NVNIHNFTTS WRDGMAFNAL IHKHRPDLID FDKLKKSNAH  60
   61 YNLQNAFNLA EQHLGLTKLL DPEDISVDHP DEKSIITYVV TYYHYFSKM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.522879
Match:	1wyqA
Description:	Solution structure of the second CH domain of human spectrin beta chain, brain 2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits